Genomic Location: not available for this species
NR annotation: XP_012556563.1, probable alpha-ketoglutarate-dependent hypophosphite dioxygenase [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families
| UniProt accession | Description |
|---|
| O69060 | Probable alpha-ketoglutarate-dependent hypophosphite dioxygenase OS=Stutzerimonas stutzeri OX=316 GN=htxA PE=3 SV=1 |
| Q5YW75 | Ectoine dioxygenase OS=Nocardia farcinica (strain IFM 10152) OX=247156 GN=ectD PE=3 SV=1 |
| O18778 | Phytanoyl-CoA dioxygenase, peroxisomal OS=Bos taurus OX=9913 GN=PHYH PE=2 SV=2 |
| Family type | Membership / link |
|---|
| Orthogroup (gene family) | OG0003982 (this species only) |
No Gene Ontology signature was detected for BRAKERKREP00000013675.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the
Functional Domain Search page, which searches all 148 annotated genomes at once.
No KEGG orthology assignment for BRAKERKREP00000013675.1.
Searching by KO or pathway ID across
all species is available on the
KEGG Pathway page.
Expression pattern (RNA-seq)
Transcript abundance of BRAKERKREP00000013675.1 across
29 RNA-seq samples of Hydra viridissima.
This gene has no row in the species' RNA-seq expression matrix, so every value below
is shown as zero — the matrix simply does not cover this transcript.
Values are TPM (transcripts per million) from the StringTie quantification; one bar is one
sample, grouped and coloured by condition, sorted by expression within each group.
29Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM
By condition
| Condition | Samples | TPM > 0 |
Mean TPM | Max TPM | Mean, relative to max |
| whole body |
18 |
0 |
0.00 |
0.00 |
|
| Whole |
6 |
0 |
0.00 |
0.00 |
|
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 |
1 |
0 |
0.00 |
0.00 |
|
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 |
1 |
0 |
0.00 |
0.00 |
|
| symbioic hydra M9 strain · symbioic hydra rep1 |
1 |
0 |
0.00 |
0.00 |
|
| symbioic hydra M9 strain · symbioic hydra rep2 |
1 |
0 |
0.00 |
0.00 |
|
| unannotated |
1 |
0 |
0.00 |
0.00 |
|
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
