Gene detail

Detailed information of BRAKERKREP00000013677.1 in Hydra viridissima

Genomic Location: QPEY01000074.1:601543...607341
NR annotation: XP_002166297.1, syntaxin-18 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2W9	Syntaxin-18 OS=Homo sapiens OX=9606 GN=STX18 PE=1 SV=1
Q5REB4	Syntaxin-18 OS=Pongo abelii OX=9601 GN=STX18 PE=2 SV=1
Q8VDS8	Syntaxin-18 OS=Mus musculus OX=10090 GN=Stx18 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10496 all species →	Syntaxin-18_N	SNARE-complex protein Syntaxin-18 N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019529 all species →	Domain	SNARE-complex protein Syntaxin-18, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15959 all species →	SYNTAXIN-18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08492	STX18; syntaxin 18	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000013677.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

18TPM > 0

7Conditions

410.5Max TPM

164.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	8	88.12	272.49
Whole	6	6	385.78	410.49
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	223.72	223.72
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	219.07	219.07
symbioic hydra M9 strain · symbioic hydra rep1	1	1	208.37	208.37
symbioic hydra M9 strain · symbioic hydra rep2	1	1	203.42	203.42
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	272.49
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	255.81
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	253.07
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	234.91
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	226.66
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	212.42
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	122.54
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	8.23
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	410.49
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	396.07
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	385.95
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	384.64
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	377.43
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	360.13
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	223.72
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	219.07
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	208.37
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	203.42
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.