Genomic Location: QPEY01000076.1:891610...909800
NR annotation: XP_047132498.1, conserved oligomeric Golgi complex subunit 4 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000013867 |
| Transcript |
| BRAKERKRET00000013867 |
| Protein |
| BRAKERKREP00000013867.1 |
| UniProt accession | Description |
|---|---|
| Q8R1U1 | Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus OX=10090 GN=Cog4 PE=1 SV=1 |
| Q3MHG0 | Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus OX=9913 GN=COG4 PE=2 SV=1 |
| Q5R7R6 | Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii OX=9601 GN=COG4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003268 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20662 all species → | COG4_C | Conserved oligomeric Golgi complex subunit 4, C-terminal | Repeat | Interproscan |
| PF20663 all species → | COG4_N | Conserved oligomeric Golgi complex subunit 4, N-terminal | Repeat | Interproscan |
| PF08318 all species → | COG4_m | COG4 transport protein, middle alpha-helical bundle | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR048682 all species → | Family | Conserved oligomeric Golgi complex subunit 4 | Interproscan |
| IPR013167 all species → | Domain | COG4 transport protein, middle alpha-helical bundle | Interproscan |
| IPR048684 all species → | Domain | Conserved oligomeric Golgi complex subunit 4, C-terminal | Interproscan |
| IPR048680 all species → | Domain | Conserved oligomeric Golgi complex subunit 4, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24016 all species → | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006890 all species → | Biological Process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Interproscan |
| GO:0007030 all species → | Biological Process | Golgi organization | Interproscan |
| GO:0017119 all species → | Cellular Component | Golgi transport complex | Interproscan |
| GO:0048213 all species → | Biological Process | obsolete Golgi vesicle prefusion complex stabilization | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20291 | COG4, COD1; conserved oligomeric Golgi complex subunit 4 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of BRAKERKREP00000013867.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
