Gene detail

Detailed information of BRAKERKREP00000013895.1 in Hydra viridissima

Genomic Location: QPEY01000076.1:510338...513698
NR annotation: XP_002154048.1, V-type proton ATPase subunit d 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W4P5	V-type proton ATPase subunit d 1 OS=Drosophila melanogaster OX=7227 GN=VhaAC39-1 PE=2 SV=1
Q25531	V-type proton ATPase subunit d OS=Manduca sexta OX=7130 PE=2 SV=1
Q6PGV1	V-type proton ATPase subunit d 1 OS=Danio rerio OX=7955 GN=atp6v0d1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007143 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01992 all species →	vATP-synt_AC39	ATP synthase (C/AC39) subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036079 all species →	Homologous_superfamily	V-type ATP synthase subunit c/d subunit superfamily	Interproscan
IPR035067 all species →	Homologous_superfamily	V-type ATPase subunit C/d	Interproscan
IPR016727 all species →	Family	ATPase, V0 complex, subunit d	Interproscan
IPR002843 all species →	Family	ATPase, V0 complex, c/d subunit	Interproscan
IPR044911 all species →	Homologous_superfamily	V-type ATP synthase c/d subunit, domain 3 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11028 all species →	VACUOLAR ATP SYNTHASE SUBUNIT AC39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0033179 all species →	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0007035 all species →	Biological Process	vacuolar acidification	Interproscan
GO:0016471 all species →	Cellular Component	vacuolar proton-transporting V-type ATPase complex	Interproscan
GO:0033181 all species →	Cellular Component	plasma membrane proton-transporting V-type ATPase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02146	ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d	-	Rheumatoid arthritis	ko05323	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000013895.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

18TPM > 0

7Conditions

31.2Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	8	2.41	31.19
Whole	6	6	3.64	5.25
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	3.91	3.91
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	3.55	3.55
symbioic hydra M9 strain · symbioic hydra rep1	1	1	2.84	2.84
symbioic hydra M9 strain · symbioic hydra rep2	1	1	3.34	3.34
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	31.19
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	3.06
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	2.81
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	2.19
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	1.41
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	1.32
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.99
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.37
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	5.25
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	4.68
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	4.51
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	4.02
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	3.06
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.33
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	3.91
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	3.55
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	2.84
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	3.34
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.