Gene detail

Detailed information of BRAKERKREP00000014079.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047126733.1, uncharacterized protein LOC100198789 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000014079

atgattgCAGAACAGCAACCTAAATTTAATACATCAATTCCAACAAAAACATCTTTTGGACAACGTTTCCAAACTAAAGCATTTAAAGACTTGTTGTTATTTTGTGTTGATCcatGTCCTgttatattcaaaaacttttctcGCTCTTTGCCAATACAACCTAGTGTTTTAATTAATGGAGGAGATTATACTACCATCACAAACGGAGTGTTAGAGTTGTTTGAAGTAAGTGGGCCTACTGATGGAGACCAAGGAACTTCATACATTCGTCCCATAGGCTGTACAAATCCTCCTCTTTATTTTCCTCCAAGTAATTACTTTTGTTTGAATGTATCAAATGGAGATATATACTTGACAAAGTGGTATATTGATCGACCACCTAAGTTCAACTCAACATacatagttaaaataaatcttataaatGTCACAAAGGCAATAGTTCAGTATGCAGTGTCGATTCAACTTCTGTTACCATCTTGTATCAGCTCAAAACCTTTAAGCTACATTTTGAATCCAATAGGATCAAGTGTGTGCAATAGTTATTTAAGTTCTGTCCAGCTGTCGCAAGTAACTGCACTTCCTAATGTCACTTTTAACCTTGTTGTAACAGAAGCAATGTTGAGTATTGTGGGTTTCTCAGTTAACTTTCCATCtcaatatgttttaaatgtaagcACGAGTCCGAAAGTTCTGTTGCAGATAGAAGATAAAATGAAGAATAAGTTCTATTTTACTTCTGAAGTTTTAGATGTTAGTAAAGTACAATATATCACCACCCGCTTAAAAACAGTGTATAACATTGGAGAtctttttacaataactttaGGAATCTCTGATTTGTCACAAACATTAGCATTTCCTTCCAGAAGCACATTCAAGGTTGTATATATATCAGATTGGACAATGTGCTCAACAGCAAACTATCAATGCTtagaaaattacttaaatttcaataaaacataTTCATCTTGCAACATCCCTGATCCAGACTTTCTATACTCTTATGAAAAATGCTTTGATTTACAACCCAAGTTAAGAGTTCCAATGTTGACATCTTTCAATGTGATTTGCAACTATTACTTGAGCATTGTTGGTTTAAGAAACTTTggatattttatgttatttaatgATACAGTATTAGCTAGTTCAAGATTTAGTAATTCAAGACAACCATTACGTAAACGAAGAGATTTGTTCAGCTTGAATGAAACTGTGACTTTGTTTTTCAGCATGACTTACAAGTATAAGAATGGTTATTTCCAATGTGGTTTGAATGATACGAGTTTAACAAGACCACTAATGTTGTcagaaaagttaaatgttaACATTCCAGatttgtacTTCTCACCATTAAACAATTCTTATGCAGAATTTGTTGCCGGTTCAGCATTAGTTGTTCCTAAATGCCATTTTGCTTCAACAGTCCCTACCAttcctattaaaaaaacagatatatTTTGGGTTAAAGATGgtgtcattaaaatttatgcaacTGAAGATCCTACAGCATTGGAGGCAAATGGAgtagaacaattttttttgtttcctcCTTTGCAAATTGAAAAAGCTACTTTTTCTGATGGTGGTATTTACCAATGTGCAGTTCAAATAGCTGACCAAATGGAACATCCAGTGTTTTCAGATAAgtttaaagtcaaaataaatGcCCAAGTTGTGgagtttctttcaaaaattgagtttcaaaattatataaactCAGCAATCTTGTTTAACTGTACTTATAAGGCCCAACAAGATCTCTCTGCTTTTTCATATTGGCTGTTCAATGGCGTAACCAAGTTGTTTGGATCTAGtacattaaaaagaagaagtGTGCAATATGAGGTGGCACCACTGCGTATTGAAAGCTATAATATGATTGGTTCATACCAATGTGTTATATTTGATAACAACACCATGGATAGAGATTTCACTTCTGAAGCTTTTGTTATTCCAAAGCAACCAGatccagtatttgtaaataatccTTCTCTCAATGTTGATGGAATTGTTCAAGTGGGTCATTTCAACAGTATAATTGGTTGTATCTTTGATACTTACTTTGAACTTAAAGATgaagatatatattttattaaggATGACACTTATAAACTTTTCACTACTTCTTATTTGGAAAATGAGTCAAAGTTGCCGCCTTATAGGTATAGGTTTGCTGATCTGAACATTGAAAGAATAAGCTATAGTGATCTCGGTTATTACCAATgtacaataaatataactgGGTACTCTATGAAGGAAATTAGAAGTGACCGTGTTGATTTGCAGTTACCTGataCTTCAAATACAAAGcttattttgaagttaaacAGACCATGgattaatgaatatttaagcCAATCTTCAGcaacatttaaagatttaaagaatgTTGTTGAAGAAAGTATCAAGCAAGTAGCTTtaacaattgtaaaaagtaCTATGAGCTTTTCTCCTGCAATTATTGTACAAGTTACTGAGTTAAGtcCTGGAAGTGTAGAAAGTGTGAATGTAATATCACGGCTTACGCTTACAAATGTTAGTGACTTTATGAAGCTGCAACTTTCCAATATAATCATACAAAATATAAGCgtcaattcttttaaacatcTGGATGCTGTATCTGTCGAACTCATAAGTTTAGACTATTGTCCAAAAAGCAGTTTTGGTGATGTAAATTACAAAGGTGAGTATACATTTGAGCAGACTCTTGCCAACCAAGTTGTGCAACAAAACTGCACTTATCAGAGCAAAGGATTTGTACGAAGAAAATGTGTTGGTAATTTAAAGGATGGTCCTGCCTGGGAGACTCCTGATCTATCTCAGTGTGAACCTAAATCTCTGACAACGATGAAGTTGATTCAACTTAGTGAGgTAGTAATCTGTGTTGATAAATCAACAACTGCCTGCTCACCGGTTGATATAATCTCCAAAAATCTTAATGATATTGTTGTAAATAGTTCTGCAATAACAAATTATCATGATGTAAGTTTGATTGCAAACACTCTAGAAGCTATCGTCAATGTTTCTGTCAATACTTCGACTGCTTCAGAGCagGTTTTCAAAGATGTTTTACAGACCATCGACAGTTTACTGGAGTCAAATGCAACATTAATTGCAGAATCCCAAGTTGCAACATCTTCTTCAACAAGCATTTTGAACACTCTCACTTTGTTTGCTGAACTTTATGCAAAACAGGctgataaaaaacttcaaataagcAATAGAAATATCGCTTTCTACATTGAAAAAGTAAGAAGAGGGGTGGTCACTCTTTCAGCTCAACAATTATCAAATGGTTCTGTGgaagttaattttgaaaatattgatttgaacAAAGTTGGTACAAATTACGCTTATATTCAAATACCAAGCGAAGTATTTTCTAACAAAAGCGAAGTTATTCACTCGTACTTTTTTCGTTacgattctttttttttgagcgaAAGCAAGTTGCTAAAACTTGTAGGTAAAAACGTCTCAGGTGAGCTCCTAATTCAAAGTACAATCCTCTCAGCAACCGTTGGATCTAAAACAGTTGCCAATCTAATAACTCCAGTTATTTTGACATTCAAAAGGACCCAATCGTTGGAACTTTCTGGTGTCAGTAGCTGCCATTTTTGGGATGGAAATTTTGAAACCGGCATCAAAAACGTATTTGGAGCATGGCTACAGGATGGTTGCTATAAATATGAGGCCGGAATTAACAATGATGAGTTTTATACTTGTGCTTGTGATCACCTTACCAACTTTGCTCTGCTATTGGATGTAAATCAAAATTCCGAAAATCCATTGGCGTTGAAAATAATTACGTTCATCGGCTGTGGCATATCGTTAGTTGGATTATCACTTACTTTACTAACGCTTTTTGTGTTTCGAAATCTTCGGCAAAAACTTCCTCCGAAAATCCTTATATGTCTTTGCATTTCATTGTCGGGACTTCTTCTGACGTTTTTGATTGGAGCAGAAAAGACTTCGCCCAGACGAGGCTGTCAAGTTATTGCCGCAATAATacatttcttcattttatcgACGTTTTGTTGGATGTTGGTTGAAGCATTCAACTTGTATCGTTCGTTTgtcacagtttttaaaaaaagtgggGATACGAATGTTTTGCGAAACGCTAGCATCTTTGCATGGGGAGTTCCTGCCATTATTGTTATCATCGCCGGTATCTTAAAACCAGATCAACTAGGAAACGATAAAGTaTGCGTCATTCGTGGATACCCGTTTTATTTTGGCGTTCTTCTTCCAGTCTGTCTGATTGTACTTGTGAACTTTGTTGTGTTAATAGTGACGATTCTTAGCTTAACGAAAAGAGTAAGTACTGGCAAAGAAACCACTGCAAAAGAGTATTACTTATCGCAAGCTAGAATTGCATTTATGTGCGCTACTCTTCTCGGCTCATCGTGGTTGTTCGCAGTGCTGGCAGTTAAAGACTTGTCATCGGTCTTTCAATGGTTGTTCTGTATCACAACATCACTGCAAGGTTTCTTCATATTTGTGTTTTAcatattaagaaataaagaagCTAGAACCGAGTGGCGACGTTGTTTCGGAGtcaaaaaacaacattctATCGTATCATCATCAGATCCTAGAAGTTATGAGTTAAGTACTCCGCATTAA

Transcript

BRAKERKRET00000014079

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CJ11	Adhesion G-protein coupled receptor G2 OS=Rattus norvegicus OX=10116 GN=Adgrg2 PE=1 SV=1
Q8CJ12	Adhesion G-protein coupled receptor G2 OS=Mus musculus OX=10090 GN=Adgrg2 PE=1 SV=1
Q8IZP9	Adhesion G-protein coupled receptor G2 OS=Homo sapiens OX=9606 GN=ADGRG2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0051897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR053066 all species →	Family	Adhesion G-protein coupled receptor G7	Interproscan
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR036445 all species →	Homologous_superfamily	GPCR family 2, extracellular hormone receptor domain superfamily	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47767 all species →	ADHESION G PROTEIN-COUPLED RECEPTOR G7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000014079.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000014079.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

10TPM > 0

7Conditions

33.8Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	2.66	24.84
Whole	6	5	21.55	33.82
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	22.61	22.61
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	20.08	20.08
symbioic hydra M9 strain · symbioic hydra rep1	1	1	10.04	10.04
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	24.84
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	23.09
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	33.82
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	26.53
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	25.22
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	22.21
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	21.54
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	22.61
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	20.08
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	10.04
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.