Gene detail

Detailed information of BRAKERKREP00000014531.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047127508.1, low-density lipoprotein receptor-related protein 6-like isoform X4 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000014531

ATGGCAGAAACTGTTATTGCAGTGAAAGAGGATAGAAAGAACCTAATGCAGTATCCAAGGCATGAAATTccattatttacttttatagcTTTTCTGCCATCAGATGTCTGTGCATTACGTAGTGAGCATGGACCTTGTCAGCcattcaattttattacaaagtgGTACTTTAACTCTTTGACCAAGTCATGTGAGGAATTTTTATATGGAGGTTGTGAAggaaatagaaataaatttgacaCAAAGATGGAATGTCAGGCAACTTGTGGaggAGTGTGTCCATATACAATGAGTGCTGGAACTTGTGTTTTCAAGCCTAATTCATGTATTAGCAACAGTACATGTCCAGGAAAACAGCTATGTTGCTTGCAGGGATGTGCCATGGAATGCCTTGATCCAACATCAACTCGGTTTGTTCTTGATGTCCCTACCCAAtctataatatttatgaaatctAATGGTTTATTTAACACAAATAGTTTCACTCTGTCACAAGGTTCATTGTTTAAAGAGAAGTTTACAAATATGACTACATCCTTTATGGTTTCATCAGGAATTAGTAGATCTGAAATGGTATCTTATCAAGatactttttattcaactaCAGATAGTTTTAGAACGACAACAATGCAAACCAAAGTGTTGGCAATTACATCTTTGAGCACCATTCTAACATCTTCAAGcagtatttctttttcatcaaagagttttaataacaaaactttattacttCCAGCATCTAGTATCAATTTGGTCTCATTAGCGCCAACAGAAACATTGAGttattctttaacaaattcaCTAAGCATAGCTAAGGTTTTTTCAGATAGTATACTAAACACGTTATCTACTGTTACAACTGAGCCAACTGAAGCTCTATGCGCAGCTGATTTATGCAAAAATGGTGGCAGCTGTTTTGTTAAGAATGAAACAACGAAATGTTCATGTGTTGATGATTGGTTTGGTTCAACATGTCAGCTAAATACgaAACCTCAGTTGGTCACAGTGTTGTTTGAGACATCGAGTGAAGTTTCAAAAGAATTGATTATTACGACATTAGCAAATTCTTATTCACGGTATTGTTCCAGTGAGGAAAATCTATGTGCTTATGACGCTCAAAAAAGACGACGACGTTCATTATTCGAGAAATTTAATGAAGACAACATTTACATCTCTAAGTTCGAATACTTAAACAATCGTCTAAGTATGGTATTTGCAATAGTGAGTGACACGAACGGTGTCATGACAAAAGAAAGTATCGAAGCAGGTTTGAGCAGTTTTAGTGAATCATTGGAGAGGGATCTTCAAGTGAAAGCTGTCAATTTGAGTTATTTGAAGACCGACCAGagctcaaaaaaaagtaattctcCAATAGTTGCAGCGCTGGTTTGTCTGTTTGTTGTGGTCACCatcttgatttttcttttcgcTTTCTTACGCTACAAAAGAAGgcCTGGTCAGCCGGGCACTGGAGTTCATTGGTCGTTTGGGAACCAACTTTATACTGATATTTACCCTCACGACGTTTCTCTTTCGACAGAAACATCTCCGAATTCCCTCAGTTACACAAATCCAATGTACAGTGCAAGCAACTTTGAcgaaaatgttgataaaactACAAATGACTATATACATGGGGATAAAGATTATAAGTTGCGTCCGCAACAATGGGTGCAGTTTACGGATGAGAAGGatgaagttttagaaaaaccgCCAATAACTGAATTTGTTTCGCCATATGATGACTTCCAATCTGATATGAAACAGGATATGGCAGTTTATTCGTCTCAAGAAAATACAACAACTTATCTAAGTTCATACccaataaataatgaaaaatttctcaattatGTTAACTCATCTTCACAACTCAGTGATGAGCATGTGGTTTTACCGAGACCGGCTAAATATGTCGGTCCCAGATCAATTGAAGTTACTCCTTTAGATGCTACTTTATCAAATAGAGAAAAAGAAGGAGCTTCTGATTGCTGA

Transcript

BRAKERKRET00000014531

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P86733	BPTI/Kunitz domain-containing protein (Fragment) OS=Haliotis asinina OX=109174 PE=1 SV=1
P84875	Carboxypeptidase inhibitor SmCI OS=Sabellastarte magnifica OX=389514 PE=1 SV=1
P26228	Protease inhibitor OS=Sarcophaga bullata OX=7385 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000496 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00095 all species →	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan
PF00014 all species →	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008197 all species →	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR002223 all species →	Domain	Pancreatic trypsin inhibitor Kunitz domain	Interproscan
IPR036880 all species →	Homologous_superfamily	Pancreatic trypsin inhibitor Kunitz domain superfamily	Interproscan
IPR036645 all species →	Homologous_superfamily	Elafin-like superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051388 all species →	Family	Serine protease inhibitor and venom toxin	Interproscan
IPR020901 all species →	Conserved_site	Proteinase inhibitor I2, Kunitz, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46751 all species →	EPPIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0030414 all species →	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0010466 all species →	Biological Process	negative regulation of peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000014531.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000014531.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

5TPM > 0

7Conditions

0.3Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	0	0.00	0.00
Whole	6	5	0.10	0.26
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.26
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.21
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.06
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.05
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.04
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.