Gene detail

Detailed information of BRAKERKREP00000014552.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047123501.1, cytoplasmic polyadenylation element-binding protein 1-B-like [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52KN7	Cytoplasmic polyadenylation element-binding protein 1-B OS=Xenopus laevis OX=8355 GN=cpeb1-b PE=2 SV=1
Q91572	Cytoplasmic polyadenylation element-binding protein 1-A OS=Xenopus laevis OX=8355 GN=cpeb1-a PE=1 SV=2
Q9BZB8	Cytoplasmic polyadenylation element-binding protein 1 OS=Homo sapiens OX=9606 GN=CPEB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001456 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16367 all species →	RRM_7	RNA recognition motif	Domain	Interproscan
PF16366 all species →	CEBP_ZZ	Cytoplasmic polyadenylation element-binding protein ZZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034819 all species →	Family	Cytoplasmic polyadenylation element-binding protein	Interproscan
IPR032296 all species →	Domain	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Interproscan
IPR038446 all species →	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan
IPR034977 all species →	Domain	CPEB-1, RNA recognition motif 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12566 all species →	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000900 all species →	Molecular Function	mRNA regulatory element binding translation repressor activity	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0008135 all species →	Molecular Function	translation factor activity, RNA binding	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:1990124 all species →	Cellular Component	obsolete messenger ribonucleoprotein complex	Interproscan
GO:2000766 all species →	Biological Process	negative regulation of cytoplasmic translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02602	CPEB, ORB; cytoplasmic polyadenylation element-binding protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000014552.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

9TPM > 0

7Conditions

5.0Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	1	0.28	5.01
Whole	6	5	2.88	4.34
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	2.32	2.32
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	2.54	2.54
symbioic hydra M9 strain · symbioic hydra rep1	1	1	1.87	1.87
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	5.01
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	4.34
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	3.84
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	3.41
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	2.99
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	2.72
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	2.32
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	2.54
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	1.87
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.