Gene detail

Detailed information of BRAKERKREP00000014816.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047143384.1, RNA exonuclease 1-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000014816

ATGAGTGATGAAGCAATTCGTAACTATATttcatcaaatgaaaatgatgataCCACGTATAAAGCTGAGAAAGAAAGGTATCATTTATATGCTTGTGGTGGTTGCCCATTTGCAAACatGGCAACTATTGTGCTTGCGCTGAAAGGTCTTGAAGATGTAATATCAGTTAGCTTAGTTGATCCTGTATTTGATGCTGAAACTGGATGGAGATTTACACCTGATATAAGTGGTTGTACTGATAATGTATGTGGGAAAATCTACTTGAAGGATGTTTATGAAATGTCACATCCAGAGTATCAAGGAGTAACCTCTTTAGGTTACAGTAAACAGACAAAAATTCCTGttctttttgataaacaaacaaagaaaattgttaacaATGACTTTATAGATATTATGAAAATGCTAAACACACAGTTTAACAAGTTCTCACCATCAGAGAAACACGCACTTATCAACATTTATCCAGaagataaacaaaatgatattgataaaatgaatCAGTGGATCAATGAtgATATCATTATGGGTGTTTACAAATGTGGATCTGCAAAACTTCAGGAAGATTATGATAGACATGTTAATAAGCTGTTCGACAGTCTAGATAGGgtGGAAGATATTCTTTCAAAGAGCAGGTACTTAACTGGAAATACTATTACCTTGGTAGATATTTGCTTGTTTTCATGTCTTGTTCGATTCGATAGCTGTTATTATACATTATTCAAGtGCTCTAAACAAATGATAAGCTGGTACAAAAACATATGGGGATATACACGAGATATTTACCAAACTGGAACAATCAAGAACATGATCCACTTTGACCATATCAAGTCTTTGTATTGGgACCATCCTCCCTCTATAAAATTTGACGTTGATGAGCTTTTTTCTTTGGGGGGTAAGCGACCAATGGGTTCATCATTAAATATCAATGACATTCGCGCCCTTCTGTTAATTACTGTGACAGACCCAAATTATGTAGTGGTTCCAAATTGGTGTCAGATTAAAAGTAGAAACAGAATTAAGCGATCAATCTTTTTAATGGTGGGTGGTGTTTCAGAGGATGATTTTACACTGAATGTAgattgttttccatttttgacaaaatgttTTGGCAAGCATATTCCTGTTCGAAATGAAGGCTCTGATTACATGCTCAAGTCTCCTTTAGAAAGCTACCTAATGTACAgcttgtcaaaaaaaatgctgcaaaGACAGTTGATGGAGAAAGAAAATGACAAAgATTCTGAACTTGACTTTCATGAGTACATTTTAAGTGACTATCAATTGAAAGTGAATGATTTCCCTGACTGGAACTCAGCTGCTCTTGAACATGGTGTTGTTTCCACTCGAAAAAACAATGAGGTGGTTCGtgctcataaaaaaagtaaattgctAGCAATCGACTGTGAAATGtgCAGTACTGCTGGTGATAAGCGTGCACTAACTCGTGTGTCTATTGTGgatgaaaacttaaaagtagTTTATGATCAGCTTGTTCAACCTGATAGTCCTATTACTGACTATCTTACACAatttagtGGGATAACTCCAGAAATTCTACATGGGGTAACTACTACATTGCAAGATGTGCAAACAGATTTGCTAGGAATCATCCAGCCTGATACAATACTAATTGGCCATTCTCTTGATTTTGATTTGCGCTCATTAATGcTTCACCATGACAACATTATTGACACATCTGTATTGTATGTAGATCAACGTGGACCAAGATATAAATCATCTCTACGTTTTCTTGTTAAAACTTACCTGAAtcgTGATATTCAAAACACAGAAAAAGGGCATTGTTCCATAGAGGATGCTAGAGCTTGTATGGAGCTTGTCAaactaaaagttgaaaaagGACCATCATTTGGGAATCCTCAAGTTGAAAGAGAAAGCATATTCGACGGTTTAACACGCGCTGGAAAGAAAGgcGTGATCATGGATGCGGCAAATATCGTTCGTCAGTATGCGCATGGAAACAATCACGGAATCGCATGCGCTTCAGATGAgcagGTCGCATCAAATGggaaaaagtttgtaaatacCCTCGACTTTACTTTCTGTCATTTTAGAAGCTATGAGCAACTGTTAAagtCTGAAGTTGTTATCACCGAAAAAGAACGCAAGGATACTCTACGAAAGTTAGATGAATATATTTCCGAGGTGATAACAGTGGTGGAGCCATGCTGCTTAGTTGTAGTTGCATTGAGTAGTGGATTCATTCCTTCAAAGACGatgaggTTGCTTAGAGACAAAGAGGAgcgaaaaaaagaagaagtaaAGAAAGCATTGAAATTAGCTAAACAAGGCGCATGCTTCGTAAAAATCACCTGA

Transcript

BRAKERKRET00000014816

Protein

Uniprot

Uniprot term	Description
P53331	RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RNH70 PE=1 SV=1
Q8L7M4	Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2
O94443	Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC637.09 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13409	GST_N_2	Glutathione S-transferase, N-terminal domain	Domain	Interproscan
PF13410	GST_C_2	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR004045	Domain	Glutathione S-transferase, N-terminal	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR034922	Domain	RNA exonuclease 1-like, exonuclease domain	Interproscan
IPR047047	Domain	Glutathione S-transferases Omega-like, C-terminal	Interproscan
IPR016639	Family	Glutathione S-transferase Omega/GSH	Interproscan
IPR010987	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32419	GLUTATHIONYL-HYDROQUINONE REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004364	Molecular Function	glutathione transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala