Gene detail

Detailed information of BRAKERKREP00000014852.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047128542.1, alpha-mannosidase 2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000014852

ATGTGGGATTTACCATACGAAACCCACATGAGACAAAATAATAATCCTCAGATGCGTTACACATGGAAAAATCCACGCGTATTCCATgctgATAATGTCCAGCAGAGTATTCAAGATCttcaaaagaaagttaatGAGCTCGGTGACATTTTAGACTTTTCTAGCAGAGCTATTGAAactattaacattaaaattgataagatCCCTGACGATGCATCCAAGTTAATTACAGTTAATAAAACAAATGGAAGTTATATAAAGTCCAATCTTCAGGAAATTGCAAAAAGCAAAAGCAAAAACTCACAAAATTCAATGTGTTTATTTAGCAGTGCATCCTCTGGTGTAACAGTAGACATCAAAATGTTAGATGTTTATGATGAAGTACCTTTTGATAATATCAATGGTGGTGTATGGAAGCAGGGCTGGGATGTTGAGTATAGAAATGAtgcttttgataaacaaaagttgttgGTATTTGTCATGCCGCATTCACATAATGATCCTGGATggttaaaaacaattgatgAATACTTTCATGACCAAACTGtcaaaataatatcaaatgtAGTTGATGCACTTGCAAAAGATGTAAAACGAAAGTTTATATGGGCTGAAACCTCTTATGCTGCATTGTGGTGGGATCAAGCATCTCCTgctaaaaaacaacttttccaAGAgCAAGTCCGTAATGGTCAACTTGAGATAGTCACTGGTGGTTGGGTAATGAATGATGAAGCTAATTCTcactattttaatataattgacCAAATGGTTGAAGGCCACCAATGGATGGAAAAACATGTtgGAGTTAAACCAAAGAATGGTTGGGCTATTGATCCCTTTGGCTATTCTCCTACTATGGCATATCTTTTAAAGCGAATGGGGTTTGAAGCTATGCTTATTCAAAGAGTCCActatagaattaaaaagtatCTTGCAGAAAACAAGGATTTAGAGTTTATGTGGAGGCAAAATTGGGACCATGGTTCAACAACTGATATTTTCACACATGTTATGCCATTTTACAGTTATGATGTCCCTCACACTTGCGGGCCTGACCCTAAAATTTGTTGCCAGTTTGATTTTAAGAGACTTCCTGGTGGAGGCACGTACTGCCCTTGGCATATATCACCCAAAGAAATTCAAGATGATAATGTAAAAGAGCGGTCAGAAACGCTTTTAGATCAGTATCGTAAAAAAGCACAGCTTTACAGATCAAATGTAGTGTTAGCTCCATTAGGAGATGACTTTCGATATGACAAAGTGTTTGAAGTTTTAGCTCAATAcacaaattatgaaaaaattattgaatatgTGAATTCCCATCCAGAATTAAAAGCAGAAATTCGGTTTGgtactttaaaagattattttcaaGCAGTAGCAGATCGAGAAGGAGTTAAACCTGGTGACAAACCACCTAGTTTTAAAACTCTAGGTGGAGATTTTTTCACTTATGCTGATCGTGATGATCACTACTGGAGTGGTTATTTTACATCtagatctttttttaagcaCATGGATCGTGAGTTAACAGGACACCTGAGGGCTgctgaaataatttattcattagcacaaagttacaataaaaaagcGGGAAATTTTCTGGAAGAGGCATTATATTCTGATCTTATATCTGCCAGAAAAGCTCTTGCACTATTCCAGCACCATGATGGAATTACTGGTACTTCAAAAAATCCAGTGGTAAATGATTTTGGTGAGAGAATGTTTACTGCAATTAAATCAAGCATCAAAGTTATGCAATCAtcagctaattttttaatgacacaCAACAAAGATCAGTATTTTAATTCAGTTGATGGTacctcaatttttttgtttggtgaAACTCGAATGGGATTTGATGCATTGCCTAtcaaaaatcttattattGTATCTGACAAACCTACAccagttgttttttataattcacttGCACAAGAGCGGAAACAGACTGTTTTCTTGCATGTTTCTGAACCATTTGTtgaaGTTAAGAGCCCCACAGGTGTAGTTATCCCTTACCAGGTCAGTCTTCTTTGGAAGGACAGTCACTCTGCCCATAGCTCAAAGTTTGAATTATCATTTGTTGCTGTTATTCCACCACTTGGTTTATCAAAATACCTTATTTCTCGTAAAGTTGATATTTCAAGTGCTCAATATTTGTCTCTTACAACAACTTACAATATTCAACAGCCAACTTACAATGAGAAGTTTAAAGTAACAGTTGGAAATGTAAATGAGATTCATGTGAAAAATAACTActtaaaagctgtttttgaTGTGGACACTGGATTGCTCTCTGATCTGTCCACAGATGGAATAGTTCTTAAGAAGATGCAGATAGTGTTTATGTCATATGGAACAGTTGCTAACATGGATAGAAGTGGAGCATACCTCTTTTTACCCAGTGGTGAAGCAGTGtcaATTGTTGAAAACAATCCACCTATCACAGTTACATCTGGTCCTATATACACAGAAGTAATGACTCGTTTACAATATGTGACACATAAAGTTCGAATTTATCACTCAGACACCTTAGAAGCACGATCTTTAGATATTCGCAATGTACTTGATATCAGGCaaacaaataattatgaaTTAGTTATGAGAATAGAAAGTGGATTGCAAAATAAAGATAGAGAGTTTTTCACTGATCTTAATGGTTTTCAGatgcAAAGGCGTAAAACATTGGCAAAGTTACCTCTACAAGCAAATTTCTATCCTGCCCCAGCGATGGTGTTTTTACAAGATCAAAAGTCTAGAATTTCACTGCAAACACAACAAGCTAATGGTGTTGCCAGTCTCGAACAAGGTTTTATTGAAGTTGTATTAGACAGGAAATTAAATCAAGATGATAACCGTGGATTAGGACAGGGTGTTATGGACAACCGGGTGACACTGTCAGCCTTTAGGTTAATTCTAGAAGATTTTGATACCACTCCTTCTGAAGGAAAACCTTCACCTACTGCTTATCCATCAATGCTAAGCATGGCTCTATCTCATCAATTGCAATATCCAATATATGATTTTCTTATTGCTGCAACTGTTCCTACTGAGCAGTTTAATTCTGGCATTTCTGGTCTGAAACTACCATTGCCATGTGATTTACATTTAGTTAATTTCAAGATGTTACAGGATAACATTAGATCAGCTCCAAGTGATACTTCAGCACTGTTCTTTCATCGAATTGGTTATGACtgtgcatttaaaaatgtttgttcaaCTAGTGGAgtaactTATGAAGAAATCTTTGCTCCACTTAAAATAGTGCATTTAGAAGAAACATCATTGAGTTTAATGCATTCTCATAAAACAATagatatcaaaaaagaaataaacattcCTCCAATGGAAATACAAgcttacaaaataaaactgatttaa

Transcript

BRAKERKRET00000014852

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28494	Alpha-mannosidase 2 OS=Rattus norvegicus OX=10116 GN=Man2a1 PE=1 SV=2
P27046	Alpha-mannosidase 2 OS=Mus musculus OX=10090 GN=Man2a1 PE=1 SV=2
Q16706	Alpha-mannosidase 2 OS=Homo sapiens OX=9606 GN=MAN2A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004090 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF07748 all species →	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR011682 all species →	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01231	MAN2; alpha-mannosidase II	EC:3.2.1.114	Various types of N-glycan biosynthesis	ko00513	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000014852.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

15TPM > 0

7Conditions

50.0Max TPM

13.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	5	9.23	49.96
Whole	6	6	24.69	30.82
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	18.15	18.15
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	20.18	20.18
symbioic hydra M9 strain · symbioic hydra rep1	1	1	19.34	19.34
symbioic hydra M9 strain · symbioic hydra rep2	1	1	17.34	17.34
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	49.96
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	39.94
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	34.24
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	24.78
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	17.23
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	30.82
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	29.22
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	22.98
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	21.97
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	21.74
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	21.39
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	18.15
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	20.18
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	19.34
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	17.34
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.