Gene detail

Detailed information of BRAKERKREP00000014874.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047128567.1, uncharacterized protein LOC100208668 isoform X8 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000014874

ATGGCAACTTTTAAGAATGCTTTTGATCCTGTTATTGATATTGATGCTGGAAAGTTTACAGAAgcagagaaaaatattttattaaaagtagtAGCTCGAGATGAAGAAATTAgaattcaagaaaaaagtaaaattgaAAACCTTAAGAttgatttaaacaacttaagaGAGAAGGGTGTTCCTGATGGAGAGGATGAAGTATATGGAAGAGTTTGCAAGCGTTGCCGAACTCCACTAGGTCTTATATTTAACTCTGGTGCTCTCTGTCCCAATTGTAGTGGAAAAGTGTGCAAGTCATGTCGTGTTACAATTGACCCACCAATTGCTGAAAACTCATGGTTATGTACTGTTTGTGCAAAAATCAgagatataAGGGCAGAATCTGGCGCATGGTTTTATGATAgttcttctaaaaaaacaaagacaaaaaaagtatatggCAGTTTccttataaaaagtattttttcaaaagCTAGAAAGCGGGattcaattatttataaagatccTGATTGGACTGAAATTATTGAGAAAgatgaGCCAATACCAGAGGAGGATGATGACCGTGATGTAGGATATTTAATGATCAGTCCAACTGAAACtaataatagtttttcaattaaaacagGTAACACAgatgttttatttgataaatctgTAGTTAATGGTGATGGGAGCTTAATAATTAGCACTCAAAAAGGTGCTCCTTTGCCTTTAAATTTGCTTCTTCTGGCCCATGGAAGTTTAAAGTCAGACAACAGTACTTTAAGTTACAGTCCACAAACAGagataactgaaaaaatatttgttgacgAAATGTTAGTTGACAAGGAAGTTACTTcattaaatcaacaaaaattatattcaaatataGTTTATGACTTGAAAGATTCATCTTCAGATGAAGGTGAGAAATCTCAAAGTGTTTCTCattatgaagaaaaacataatgaagatgatgataaaCAGTTGgaaaaagactTATGTGAATTAATTGAAGAGCCTGTTGTAGAAATTGAAGATCttggaaaaacattaaagagagaaaatgtagaaaatgaaaatagtcAATTAAATGTCTCCTTACTAACTGATGAGACAGGAAGTGATGCAGACCTTCAAGAAAAGTTAGACATTGAAAAGCCAAAAGTTCTTTCACAAAATGTTAAGTCTGAAGATGGAAAATTAAATGGAATCACCTCCCAAGtagtggAATCTCAAAGAGAGAAAGTTTCAGATGAGgcattgtttcaaaataaatttaatgaagaattgcttaaaaagaactttttaaatgcaaaagatgAAGGTGTGATCAGTAAAGATAGTTACACTAAAGAAATTTCTCAGAATTCTTCTATAAATAGGGGTTCAGCAGAACAGAGTATGAACATACCAATTGAATTTTCAAAGGAGATTGAATCTTCAATAGAGCAACCTCATTTAGATTTAGACTTAAGTAAAGAtctaagaaaagaaaagtttaagagATCAAAAACTGATGAGCATATTAGAGCTagtgaaaatgaaattgaagatTATTTAAATCCAATCAGTCTACAAGTGATTGCACCTTGTAGAAAATTATCAGATCAAGAACTCatgcaatttcaaaattatgctAATGaagatttgattaaaaagaacttattaAATATAGAGGATGAAGTTGTGATTTGTAAAGATAAtcatatgaaaaaagaaaaagttaatcaaCTTTCTGATGAAAGAGACCTAAAAGATCAGAGCATGAAcattaaaatggatttttctAAGATGAGGAAAATTGGGTCTTCAATAGAGCATCCTCTTGTTTTGCATGATGATTTAGACCTTAAAGAATTACAGAACATacttctaagaaaaaaaactttaattaaattgaaaactgATGAGCATAGCGAAGACAGTGAAAGTGAAATTGAAGATTGCTTAAATGTATTAATCCCAAAAGTTGTTAACAATGTTGCTCCCAACTTGTCTGAAAATGATAAAGCACCTCTGgacaatgaaaattttgagaagAAAGAGCACAGAAACAGAGCTggCAGCACAGAGAGTATTGGTAGTAACTACAGCATTGATGATGATATCCAACCTGCTGTTGGTATAGCTGGAGAAATTAAGGTTGGGTTTAAGTATAACGCTAAAGGGAAAATCTTTGAGGTGCAAGTTCACCAAGCAAAAGATCTTATTGTTGTTGATGTGAAGAAGAACTCGACTGATCCATATGTTAAAGTCTACTTACAGCCAGATGTAAAAAGAGGTGGTAAACGAAAAACTAAGCCTAAAAAGAACTCATTAAATCCAGAATTTGATGAAATTCTGAAAGTGAAATACGCTGATCTGATGACACGCACATGTTTAATCAGTGTCTGGCACTATGATTTCTACACTAAGAATGTCTTACTTGGAGAAGTTTCCATGAATCTGCAAGAGTATGTAAATTCTGGATATTCATTAGAAGAACCATTACCTCAATGGTATAATTTGTGTGCTCGgaaaGTTTCCAAAGCACAAGTCAAGTTTATTGGCAAGATTGTTGTTAATCTCCGATTTGAGTCATCTCCTAAAAACAAGGAGTCTAGTCTTCTTGATTTATCGAAAGGATCACTGTATGTCAAAGTGAAACGTGCGCATAATGTTCTTGCTGTGTATGAACAAGGATATTCAAATCCATTTTGTAAAGGttctCTTATATGCCCTGGAtctatttttccaaaatttaagACATCAGTTGCAAAAAATACAGTTAATCCTGTTTGGGAAGATGAGTTTGTTTTTACAGAAGTATCTTTAAAttccttaaaaaattcaactctGCAACTTTCAGTTTGGGACTATGAGAAAGGAAGTCAACATGTTATTCTTGGAGCTGTTCGTTTGGGTCAAGGTAAACTTGAAGGTTTAATGTACGATTCTTTTGGTGATGAAGTTACTGTTTGGCAAAATATGTTAGACAATCCAAGTAGCATGGAGGATTACATCATACCTCTGCGATCATCCTTAGATAGTGTAAAGGAgGATGACTCCACACCTGCAATCCgtataaaagaaaactcaGAAAAGGATTTAACTATAACTAAAAGGCCTTCTGCAATAAGCCAACGATCATTATCAAAGTTTTTGCAGCCAGATTCTGTCAGCTTGGCAAGTTCAGGTTCAATGCTAAGTGTTTACAGTTCACAAGGTGGAGAGCAGCACAATTTAGTAATATCTGGTCAAATACtcttttcattaaagtatGACAACCTTTCAGGAATTTTCTCTGTGAATATTGATAAAGCAAAAGACATTGCTGCAGCCAACTCAAAGCAGCAATGCTCTGATCCTTATGTTAAAGTATATCTACTGCCAGACAAATCAAAatctacaaagaaaaaaacaactcataaaagaaaaactctaAATCCTCAATGGAACGAAGTTATAAAATACAAATTAAGCAAGGAAGAACTTCtagaaaaaatccttttattgTCTATTTGGAATCATGATCGTTTTGGCCGTAATGATTTCTTGGGTGAAGTACAAGTAAATATgcaagaatatttaaaaacaaactcatTAGATGTTGAAAAAAGTATCTGGTACACCCTTCAAGAGATGACATTAGTTAGTGTTGGGTCCACTACTGAAAGCAAAGGTCAGCTACGTGTAGCTTTAAAGTATGACAACAATGTTCTTACCTTGGTTATAAAGGATGCTGTTGGTCTACCGCAAGTTAATCCTGATAAACTTATCAGTCCATTTGTTAGATGttatttgttACCAGATAGAACACGTAAGTCAAAAAGGAAAACTACTGtacaaaagaaaacacaaaGTCCTGTTTGGAATgagaaatttgaatttaatcaAGTTAGTTCTGATGATTTGCAATCTTGTGTCCTTGAAGTTACTGTCTGGGATCATGATTCTTCTAGCCATCAGTTTTTAGCTGGTACACGTTTAGGTTTATCACAAGGAGATGAATATTGGCATGATTGTGTtgataaagaagttttgaTATGGGAGTCAATGATGCACCACCGTGGTATTTTTGCAGAATTTACTATTCCTTTGAGGGGGACAATGACATCAAAAAAAGGtgAAGTTTCCATTCCAATGATCAGCcaatcaatttcaaattccCAACTAACAGAAACTAGCAGTAAACAACTTGTGCAAGAAtttgaaaCCATTACAAGTTCTGATAAATTATTGGGACCTGGTGTTCCTGTGGTGAAAATTGCCTTACAGTTTGTTTCTCCAGAAAGTCTGCAAATagaagaagagaaaaaaggtatcaagaagaaatcaacaaaaggTATTCTAAAAGTTCACTTAAAAGATGGTAAAAATCTACCAATCAAGAAAGATGGTGATTTACCCAGTTCCTTTTGTAAAGTatttatgTACCctaaaaagaagaacttaaagTTCAAGACAAAATCTTTCATGAAGAGTGTAGATCCAAACTGGGACACTggtATGTCTTTTGAAGGTGTAATGCATCATGAATTGGCTGATAGATGTTTAGAAATTGcagtttttgatgaaagtgctgataaaaattcaaataaaattggaatCATTAGATTAGGATCTGGtgaattcaaagaaaaatgggATGATAGTACAGGGCGCGAGACAGAAATATGGAATTCAATGCTCAACAATCCAGATAAATGGGTTAGTTTAGCTCTTCCTTTAAGGCTCCAACCAAGtgTACAGAAAAGTGAAGCTCATAttcaagatataaaaaagaaaaagaaaagtaaatcaGAGAcacacaaagaaaaagaagtgcTTATTGaggatgatgaaaaaaaagatcaaaataagcatattgaaaataatggtAATGAATCACCACGCACTGCTGCATTACGTGCCATGGGAGTATTTGCTAACACCATTGTTGATGACATACAAAAAGAGAATGAGTATAACCCACCTGTGGAAGGTCTTACTTCCATTGCTGAAGAGAATGAAATAGAGCTAAGTTTATCACCAAAAAGAGTTCCTGAAATAACTGTCTCAACTTATGTAAAACCTGGAGATCCACCATTTCCTGGTGCTGGTGAGGTTCATGTTGAAGAATACAAAGCTAAAGAGCCTAAGAAGCAAACTCCAGCAATGTCTTTATTAAAGCGCTCGACAAGTGAAACAAGCTTGGCAAGCGTTTATAGTACAGATAGTGCTAATATTTATGGCCAAATTCCAATTCGTGGTGAAATTCAGTTTGGGATGAAGTATGATGATAAAgatgcaaaatttgaaatccaTATATTTAAAGCAATCAGCTTAGCTGCTGTTGAtactaaaaaagaaacctCTGATCCgtattGTAAAGTTTACTTACTTcctgataaaacaaaaaaagggaaaaaaaaaacaaaaacaaagaagaaaacttTGGATCCAGATTGGGAAGAAGTATTGACGttttcaatttctCAGCGTGATCTTCGAACACGAACATTATGGGTGTCTGTTTGGCATCAAGAGAGACTTGgaagaaacatttttctcGGAGAAGTCATGCTTAACATGGATTTGTTAGTAGATCAAGGAGAACTTAGCTCTACATTACCTAAATTATACACTCTGTGTGAAAAGGGAGAAGCTCCTGTAGCTCATCTTACAGTAGGtgaacttaaaatttctttgatgtTTGAAGACCAAGGCTTACTAAAcgaaaaagagaagaaaagaCATGATGAACAGGAAGAACTATTTGGGtccaaaaagaagaaaaagaaaggaaaaaagaaaactccgGGGAAAATCAATGTTCATATTAAGGAAGCTTGTGATTTACCGGCAGCTGATCGTGACGGATTTTCAGATCCTTTTTGCAAATGCTATCTACTTCCTCTAAAGAGCAGTAAAACTAAGCGTAAGACTCCTGTTATAAAGCGGACATGCAATCCGGTATGGGATTATCAAATGACCTATGAACTAGATTACGAAGATTTGGCTGATTTTGGAATTGAGTTCACTatctGGGATTGGGATAGAGCAAAAGGGAATGACTTTTTAGGCTGTACTCGAATCAATTTAGGAGGACAGATGGGAAATTGGGACGATGCTGAAGGTGTCGAAATTTTAGCTTGGCAACACTTAATAGACCAACCTAATAAATGGAAAGATTTTGTCATCCCTTTGCGCTCTTCGAAGGATAATCCAGGTTTTGAAGTTAAAGATGACCGAAGGTCATTATGTGGTTGCAATATCACAAACACAAAAGTTTATCTTGACCTCAAATCAGTATGCTTTCTTCTTGGCCAGCGCCAGGTATCCTTGCTTTCTGTGCATGTGAGACAACAGAGCAAGGGAGAAAGATTTGGTAGAAAGGAATAG

Transcript

BRAKERKRET00000014874

Protein

BRAKERKREP00000014874.1

MATFKNAFDPVIDIDAGKFTEAEKNILLKVVARDEEIRIQEKSKIENLKIDLNNLREKGVPDGEDEVYGRVCKRCRTPLGLIFNSGALCPNCSGKVCKSCRVTIDPPIAENSWLCTVCAKIRDIRAESGAWFYDSSSKKTKTKKVYGSFLIKSIFSKARKRDSIIYKDPDWTEIIEKDEPIPEEDDDRDVGYLMISPTETNNSFSIKTGNTDVLFDKSVVNGDGSLIISTQKGAPLPLNLLLLAHGSLKSDNSTLSYSPQTEITEKIFVDEMLVDKEVTSLNQQKLYSNIVYDLKDSSSDEGEKSQSVSHYEEKHNEDDDKQLEKDLCELIEEPVVEIEDLGKTLKRENVENENSQLNVSLLTDETGSDADLQEKLDIEKPKVLSQNVKSEDGKLNGITSQVVESQREKVSDEALFQNKFNEELLKKNFLNAKDEGVISKDSYTKEISQNSSINRGSAEQSMNIPIEFSKEIESSIEQPHLDLDLSKDLRKEKFKRSKTDEHIRASENEIEDYLNPISLQVIAPCRKLSDQELMQFQNYANEDLIKKNLLNIEDEVVICKDNHMKKEKVNQLSDERDLKDQSMNIKMDFSKMRKIGSSIEHPLVLHDDLDLKELQNILLRKKTLIKLKTDEHSEDSESEIEDCLNVLIPKVVNNVAPNLSENDKAPLDNENFEKKEHRNRAGSTESIGSNYSIDDDIQPAVGIAGEIKVGFKYNAKGKIFEVQVHQAKDLIVVDVKKNSTDPYVKVYLQPDVKRGGKRKTKPKKNSLNPEFDEILKVKYADLMTRTCLISVWHYDFYTKNVLLGEVSMNLQEYVNSGYSLEEPLPQWYNLCARKVSKAQVKFIGKIVVNLRFESSPKNKESSLLDLSKGSLYVKVKRAHNVLAVYEQGYSNPFCKGSLICPGSIFPKFKTSVAKNTVNPVWEDEFVFTEVSLNSLKNSTLQLSVWDYEKGSQHVILGAVRLGQGKLEGLMYDSFGDEVTVWQNMLDNPSSMEDYIIPLRSSLDSVKEDDSTPAIRIKENSEKDLTITKRPSAISQRSLSKFLQPDSVSLASSGSMLSVYSSQGGEQHNLVISGQILFSLKYDNLSGIFSVNIDKAKDIAAANSKQQCSDPYVKVYLLPDKSKSTKKKTTHKRKTLNPQWNEVIKYKLSKEELLEKILLLSIWNHDRFGRNDFLGEVQVNMQEYLKTNSLDVEKSIWYTLQEMTLVSVGSTTESKGQLRVALKYDNNVLTLVIKDAVGLPQVNPDKLISPFVRCYLLPDRTRKSKRKTTVQKKTQSPVWNEKFEFNQVSSDDLQSCVLEVTVWDHDSSSHQFLAGTRLGLSQGDEYWHDCVDKEVLIWESMMHHRGIFAEFTIPLRGTMTSKKGEVSIPMISQSISNSQLTETSSKQLVQEFETITSSDKLLGPGVPVVKIALQFVSPESLQIEEEKKGIKKKSTKGILKVHLKDGKNLPIKKDGDLPSSFCKVFMYPKKKNLKFKTKSFMKSVDPNWDTGMSFEGVMHHELADRCLEIAVFDESADKNSNKIGIIRLGSGEFKEKWDDSTGRETEIWNSMLNNPDKWVSLALPLRLQPSVQKSEAHIQDIKKKKKSKSETHKEKEVLIEDDEKKDQNKHIENNGNESPRTAALRAMGVFANTIVDDIQKENEYNPPVEGLTSIAEENEIELSLSPKRVPEITVSTYVKPGDPPFPGAGEVHVEEYKAKEPKKQTPAMSLLKRSTSETSLASVYSTDSANIYGQIPIRGEIQFGMKYDDKDAKFEIHIFKAISLAAVDTKKETSDPYCKVYLLPDKTKKGKKKTKTKKKTLDPDWEEVLTFSISQRDLRTRTLWVSVWHQERLGRNIFLGEVMLNMDLLVDQGELSSTLPKLYTLCEKGEAPVAHLTVGELKISLMFEDQGLLNEKEKKRHDEQEELFGSKKKKKKGKKKTPGKINVHIKEACDLPAADRDGFSDPFCKCYLLPLKSSKTKRKTPVIKRTCNPVWDYQMTYELDYEDLADFGIEFTIWDWDRAKGNDFLGCTRINLGGQMGNWDDAEGVEILAWQHLIDQPNKWKDFVIPLRSSKDNPGFEVKDDRRSLCGCNITNTKVYLDLKSVCFLLGQRQVSLLSVHVRQQSKGERFGRKE

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HCH5	Synaptotagmin-like protein 2 OS=Homo sapiens OX=9606 GN=SYTL2 PE=1 SV=3
Q99N50	Synaptotagmin-like protein 2 OS=Mus musculus OX=10090 GN=Sytl2 PE=1 SV=2
Q96C24	Synaptotagmin-like protein 4 OS=Homo sapiens OX=9606 GN=SYTL4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02318 all species →	FYVE_2	FYVE-type zinc finger	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR041282 all species →	Domain	FYVE-type zinc finger	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR043567 all species →	Domain	Synaptotagmin-like 1-5, C2B domain	Interproscan
IPR010911 all species →	Domain	Rab-binding domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000014874.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000014874.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

9TPM > 0

7Conditions

10.8Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	1	0.29	5.30
Whole	6	5	6.67	10.79
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	2.62	2.62
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	2.06	2.06
symbioic hydra M9 strain · symbioic hydra rep1	1	1	1.31	1.31
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	5.30
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	10.79
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	8.09
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	8.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	6.93
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	6.22
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	2.62
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	2.06
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	1.31
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.