Detailed information of BRAKERKREP00000014931.1 in Hydra viridissima

Genomic Location: QPEY01000087.1:8919...24968
NR annotation: XP_047139816.1, galactose-1-phosphate uridylyltransferase isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P07902Galactose-1-phosphate uridylyltransferase OS=Homo sapiens OX=9606 GN=GALT PE=1 SV=3
Q03249Galactose-1-phosphate uridylyltransferase OS=Mus musculus OX=10090 GN=Galt PE=1 SV=3
P43424Galactose-1-phosphate uridylyltransferase OS=Rattus norvegicus OX=10116 GN=Galt PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004397 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02744
all species →		GalP_UDP_tr_CGalactose-1-phosphate uridyl transferase, C-terminal domainDomainInterproscan
PF01087
all species →		GalP_UDP_transfGalactose-1-phosphate uridyl transferase, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036265
all species →		Homologous_superfamilyHIT-like superfamilyInterproscan
IPR001937
all species →		FamilyGalactose-1-phosphate uridyl transferase, class IInterproscan
IPR019779
all species →		Active_siteGalactose-1-phosphate uridyl transferase, class I His-active siteInterproscan
IPR005850
all species →		DomainGalactose-1-phosphate uridyl transferase, C-terminalInterproscan
IPR005849
all species →		DomainGalactose-1-phosphate uridyl transferase, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11943
all species →		GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006012
all species →		Biological Processgalactose metabolic processInterproscan
GO:0008108
all species →		Molecular FunctionUDP-glucose:hexose-1-phosphate uridylyltransferase activityInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0033499
all species →		Biological Processgalactose catabolic process via UDP-galactoseInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00965galT, GALT; UDPglucose--hexose-1-phosphate uridylyltransferaseEC:2.7.7.12
Prolactin signaling pathwayko04917deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000014931.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole body 18 0 0.00 0.00
Whole 6 0 0.00 0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1 1 0 0.00 0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2 1 0 0.00 0.00
symbioic hydra M9 strain · symbioic hydra rep1 1 0 0.00 0.00
symbioic hydra M9 strain · symbioic hydra rep2 1 0 0.00 0.00
unannotated 1 0 0.00 0.00

Per sample · hover a bar for the full sample record

Show the sample table (29 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR21134050 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134051 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134052 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134053 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134054 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134055 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134056 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134057 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134058 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134059 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134060 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134061 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134062 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134063 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134064 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134065 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134066 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134067 whole body whole body not recorded not recorded SRP392977 0.00
SRR10058802 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058803 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058804 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058805 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058806 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058807 Whole Whole not recorded not recorded SRP220397 0.00
DRR048593 aposymbioic hydra M9 strain · aposymbioic hydra rep1 not recorded not recorded aposymbioic hydra rep1 DRP003902 0.00
DRR048594 aposymbioic hydra M9 strain · aposymbioic hydra rep2 not recorded not recorded aposymbioic hydra rep2 DRP003902 0.00
DRR048595 symbioic hydra M9 strain · symbioic hydra rep1 not recorded not recorded symbioic hydra rep1 DRP003902 0.00
DRR048596 symbioic hydra M9 strain · symbioic hydra rep2 not recorded not recorded symbioic hydra rep2 DRP003902 0.00
ERR13389755 unannotated not recorded not recorded not recorded ERP162636 0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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