Gene detail

Detailed information of BRAKERKREP00000015155.1 in Hydra viridissima

Genomic Location: QPEY01000090.1:780870...781466
NR annotation: XP_012558922.1, ras-related protein Rap-1A [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99260	GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YPT6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0026792 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR052236 all species →	Family	Small GTPase RasD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46149 all species →	MIP08469P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000015155.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000015155.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

23TPM > 0

7Conditions

436.0Max TPM

74.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	13	90.96	436.00
Whole	6	6	55.16	110.46
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	62.31	62.31
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	52.66	52.66
symbioic hydra M9 strain · symbioic hydra rep1	1	1	37.89	37.89
symbioic hydra M9 strain · symbioic hydra rep2	1	1	42.32	42.32
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	436.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	210.30
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	200.30
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	196.56
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	150.67
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	119.60
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	110.87
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	101.55
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	99.52
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	9.43
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	1.13
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.73
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.70
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	110.46
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	47.33
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	45.57
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	44.11
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	42.16
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	41.34
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	62.31
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	52.66
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	37.89
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	42.32
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.