Gene detail

Detailed information of BRAKERKREP00000015384.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047137926.1, DNA-dependent protein kinase catalytic subunit [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000015384

ATGTATAGAAAATATAGAGTTGGTGAACTGCCAGATATCATGATTAAACATTCCGACCTAATTGTCCCATTGCAAGCACTTGCACAGCTTGATCACAAAGTAGGGCAACTATTGTttacatcaattttttcagcaGTGCTTAGTCAGCTGCCTCAAAACTTAAGTGAAGAAGTTGTATCAAAAGTTATTAGTGAAGTTCAGAATGCGCTAAGTCTCATGATGCAGTCCTCAACTTATTATGATCCAACTTTTATTAATGCAATTCAGAACTTATGTTTtgaaagtaaagaaattaACTTGGACCCACAAGTGGTAAGCAGTGCAAGCATCATTAGTTTGCAACAGCCTATTGGCATTTTGTTGCTTGAGAAACAACTTATTAACTTAGAGAATGTAGTTTCAGAGCCAAAAAGAAAGCGAGCTAGAGCagatttgaaatttgagaATATAATGATTTGGTCAGAGCTTGctaaaatttacaattcaattaaagattatgattttttgagaagCATATTTAGTTCTCAAATATCCACTAATGATGTGATGAAACATGCACTAGCTGCTGAAGCAACAAATGATTACGGATCAGCGCTTCAAATTTATAGAGAGGCTGCACAAAAAGAGAAATGGGAGGATAGTCCTTCATATGAAGAAGAAGAGTACTGGGACACTGCACGTTTGCAAtgttatgAAAACTTAGGAATGTGGaccaatttaaaagatttcaccGTAAGGTCCATTGAAcagataaatgaaaatgaagaatttgattttatgaaaatgtggGAAAATGACATTTTACAGGAAGTTTATTTGCCTTGCTACATAAAAAGTAACATCAAACTTATGGCTCAAGGAAATTTTGGTGCAGTTCATAAAGAGTTTCAAACATTTATTGATGcttctttattaaatgaatacaGCAAAGATCATTTGCAGATGCGGTACTGTGAAGATTTGGCCTTGTTGAAAATATTGCAAGACAACTATGGAGCTGCTCATCACTTTCTTAAAATTGCAGAAAACTCCTTCCTCAATGAATGGTCCCAAACAAGCAGACTCATTAATACTAGTCGCATAATAAAGTTGCAAAATCTGCAAAGAGTAGCTGAGATGAATGATTTTGTGAAGATGATGACCAGTGGCaATTGCAAGGACAAAGTTAAAGTTCAAGAGTTTTTAACATTGTGGTCTGATCGACTTCTACATTCAAAAAAGCATTCGACAATAGCATGGAATGATGTTGTTCTGAGTCGctgtgtttttataaataagttcaAATCCAACTTTCCTTCAGATCGaataatgTTAGATTTTTTGGAGGATGAGGagacaaaaaactttctgaaGTTGGTGAATGTTGCTGCAAAACAGGGGAATTATGCTGTAGCAAAGCAATATTTGAGTGACTCCTCTAATGTCATTCTTAAGGACAATCGAGCATCTGATCTTGGAATACAGTGGAGGCATATGTATGCCAAAGTTCATTGTAAAATGGcaaacatttttctcaaaGATACTTCTTCAAATGTTGTTGCATTATTTTCTGTAGTTGGTCACCTCGaaaaatgtaaagctattgaaacaatggaaaatttaaatcaaaatcttaTAGAGTTTGATGCATGGAGATGCTTGTCATTGTGTGTTAACCATTTAAAAGATAATGAATTAtctttaaagcttttaacaGATGAGGCTACAAAACTTGCTATTCTGTCACAATGTCACAGAAAACaagatTTTGAAGCTGCAATAAAAGAGCAGGCTTGGAAAGCTTCAAATGTGGTTTatgaaaaagcaataaattataaaagtaccGCAGCTCATGaacaAAAATTGTGTCACAAAGCATTAATGAAGATAGCTTCATATTGTGATGAACTAATTGAAAGTGAAGAAATTAGAGAAAATAAATGTGGTTATGTCAAATCAATGATCAGTAGCCTTCTAAAATCAATGTCAATGAATTCATCCAAAGCACGTTTAGCATTTCCACGATTATTGCAGCTAGTTAGATTGTTTCCAGAAACTGGTGATCTTTTTGAAAAGCAGagCAGAGAAGTGCCATGTTGGATGTTTTTGGGTTGGATTAATCAAATTGTTTCTTTGATGGACAAACCAATAGTTGTTCATTTAAAATCGATTATTAATAATATCGCCAGATCGTATAAGCATGCTTTGTTGTACCCACTGAAAGTGAGCAGTGGGCAATTCGTTTTTTCTTCAGATGAAAGCAGTTTGCAGcgaaaagaatatttaaagagattGTTAAGTTATCTGCACTCACCATTATTCGATAAGTTTGCAAATGCTGTAAACCAGCTCACAAGTCCTGTCAATCTTATGAAGgagtTTTATGAAGAAATGAGAATTCATGTCAAGCAAAGTTCTGAAAGTCAAATAGTGGCATGCTGTAAATCAATTTGGGATTTATTGTTGGATATAAGCAGTAGCCAAAATTCAGAATGCCTGCCAAAAGGaccagtttttaaagaattttccaGGaAATACTTAAGTTTTATTGAATCTTTACTTGGCAAAGATGGTAAAAAGATTGTTGGAATgtctttaaagGACTTTGAAGTAGCAGtcttagaattaaaaaacaaagtcacagaacaaaaaaaaggtgaatctttaaaagattacTCGCCTTGGTTGTATAGTTTTCAGGCTGATAATTTTACTGAATATCTTGAAATACCTGGTCAATACACAGGTGAAAGCAAACCAATGATTGAATatcatgtaaaaataaatggatttGATGAAAAGgTTTTAGTTATGAAATCAATACGACAGCCAGTTAGGTTAACAATCAGAGGAGATGATGAAAAAGATTATGATTTCTTAGTGAAAGCAGGTGAAGACTTAAGACAAGACCAACGTATTGAGCAGgtGTTTATGTTGATAAATAAGATACTTCAAAACGATTCTGTTTGCTGCAATCGTTTGCTGAAACTTAAAACATATCAAGTTATTCCTATAACACCACGTTTGGGAATAATTGAGTGGGTTAGCAATACTATTTCATATAAAGAGTTTCTGTTTAATGGTGAGGAAATGAAAATCTTACATGGACCAAAGGaccctgtaaaaaaatttaaaatattttgtgataaGTATGGAGGTATGAataatctatataaaaaagcCAATCGTAGTGAGACTGTTAAAGTGTTTGAAGATTGTGTTTCTGCTGTCCCTTGGGATTTGCTAAGATGTGCGTTTACAAAGCTTGCATCGTCTTCTGAAGCTTATTTTGTTCTTCGAAGTCATTTTATACAGTCACATTCATGTTTATGTATGGCACATTACATACTAGGTATTGGTGACAGGCACCTTGATAATATGCTTATTGATAATGGGACAGGTGGTGTTGTGGGTATTGATTTTGGATATGCATTTGGTGTAGCTACTCAGATAAGAATTATCTTTCGTAATATAAGAATTGTCTTTCGTAATATAAGAATTGAAGGTCTGTATTTAAGCAACCTCTCTCTCTACACAGCCATCAACTATTTTCAGATTTCTTGCAGTTTCTCTGAATATAAATTGGATCCATTTGCTAACTGTTGGGTAGCATTGATAGGAAATCTTGATCCTGTTACTGCCCCATTGTTGATGAGAAGGTGA

Transcript

BRAKERKRET00000015384

Protein

Uniprot

Uniprot term	Description
Q8QGX4	DNA-dependent protein kinase catalytic subunit OS=Gallus gallus OX=9031 GN=PRKDC PE=2 SV=1
P78527	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens OX=9606 GN=PRKDC PE=1 SV=3
Q9DEI1	DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis OX=8355 GN=prkdc PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00454	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan
PF02259	FAT	FAT domain	Repeat	Interproscan
PF19704	DNAPKcs_CC5	DNA-PKcs, CC5	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014009	Domain	PIK-related kinase	Interproscan
IPR000403	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR003151	Domain	PIK-related kinase, FAT	Interproscan
IPR045581	Domain	DNA-dependent protein kinase catalytic subunit, CC5	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050517	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR018936	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR036940	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0008630	Biological Process	intrinsic apoptotic signaling pathway in response to DNA damage	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan