Gene detail

Detailed information of BRAKERKREP00000015569.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000015569

ATGCCAGTGACTGATACACTAAAAAACCCTATACTTGAAGCAAACATTCAACAAGACTTTTCAAGTTTTCCTGGAGATAGAAGGTGGGATCTATTGGGTTTTGTTAAAGGAGAAGAAGTTGAAGAAATAAAGTCTTGCGAAGTTGGTTCTGATGGAAATCGATACTATCTCTTGCAGTGGAAGTTGTCTTGGAAAGCAGAAAGTTCTTTGGTTTATTGTGAAAAGTTGTTGCAAGATTTTTGGGCTAAAAAATCTCTAATTCAAGATAACTCCATGTGCTTTTCCTCGTAttcaaaatgttatgaaaaagatgcaaactttttagaagagaaattaatattaacaagTGCTAAAGATATAGAAGCCCAACAAAATGACTCTTTAAGGAAGgaaatacCATTTGCAGCTGAATTAAtggaaaatgaaaagaatGGAGACACAGTAACATCAGGTGAAGAAGCTGTTAATAATGCTAATACATTTGAAATTGAATCCACAAACCAAATGCAGCTTGATGAGCCACTAAATAGTTATACATCAATTCCCTCAAATCCAGCAGTAATTCTAGATAAAGAAGTCTCTCCACAGGCTGTAACTTTGGAGAATACTAGCAGTTTGAACCTGAATGCATCTTTTCCTtttgataatgatgataatcaatttgataaaaaaggaGCAAACAAGCGTAAAGCAAGGCCACCAAGACAAAGCATGAGGTCTTTATCTGTATCagctacaaaaaaagaaaaaattaaacttgcaaaagaaaaagtaaaaaaagccAAATCAACAAGATCGaaagttgtgAAGGCTTATAATTCATTGAGATTATCAATTAACCAAAGTGGGCCTATAGATCAagaattaaattgtaaatcaCAAAAACTAAATCAGAGAAAAGTTACAATTAAAAAGTCTCCTAAAGATGCACAGCACCAAGTTGAACTACAAGAAACAGCAAATAACTTAAAGTGCATGGTTTGTGATAAGTGTTTGTCTTCTAAGCAAAATCTAATGAAACATCTTTTGAcacataataataatcatactTGCAATGTTTGcctcaaaacatttaaaagcacACATTTCTTAAAACACCATATGGACAAGCACAATTCTTCTTATCAATACCCATGTCCTATATgcaataaattgtttaaattcaaaaacaacatGAGAGGACACCTCCGCAAACACAATATGGAGAAAAAATTTGAGTGTGAAATTTGCCACAAGAAATTTATTGGaagATATAATTTGAAAGAACATATGAAAGCACATAGTAGTGCACGGCCTTATGAATGtgacttttgtaaaaaagccTACAAAGATCGAGGAGCCCTAAATAAGCATTTACTAACACACCAAGATAAAAAGGTTGAGTGTGTTGTTTGCAGGCGTCAGTTTACCAATCAAGCTCAAGTTGTACGCCACATGCAGTTCCACTATAGTTGGCCTGGAGACAGTTTTAAACGTAAAACCTATATTGGACCTGACGGAGAGAAGCTGAAGTATAAATGTGAGCACTGTGATAAAACATTCAATCACTACTCAAATATGAATTCTCATATGCATAAGAAacataaagagaaaaagattCAGTGTGCTGACTGTCCAAAGCAATTTGCATATCAGTATGAGCTTCGTGAGCACATGTTCATGCACACTAAAGGTGAAATATCAAAGTTTAAGTGTCAATATTgtgaaaaatcttttcaaaggTCAACTACCCTAAAAAACCATGAACGCACAACACACCTAGGTATAAAACGCTTCAAATGTGAGGTTTGCGGAAAAGGATTTGGAACAAAATTCAATATGAAAGTTCATATAGACAAAGTCCATAATTgctttgaagaaaaaactcaAGTTTTAAGTGGAGACCAAGACACTGTGCCAAgtttaagttctgttttgCCTCAAGAACCAATTTCTGTTcatgaaaatttacaaacgTTACAAGTTCCACTGAGCAACAATCAATCTGTTTGGCGTCATATTAATGCCACTGAATTAATGAGAAATGCTATGTCACATATTCCAGAGTTTGGATATTTTTCACCAATTCACCCCAGTTCATCTAGAGGCTATCAGTTTTATAGCTCCTAA

Transcript

BRAKERKRET00000015569

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379 all species →	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000015569.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

15TPM > 0

7Conditions

42.8Max TPM

15.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	6	10.16	42.79
Whole	6	5	28.04	39.55
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	21.12	21.12
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	26.30	26.30
symbioic hydra M9 strain · symbioic hydra rep1	1	1	20.09	20.09
symbioic hydra M9 strain · symbioic hydra rep2	1	1	18.98	18.98
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	42.79
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	42.23
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	34.81
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	28.12
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	20.86
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	14.11
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	39.55
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	38.83
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	32.61
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	29.39
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	27.86
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	21.12
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	26.30
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	20.09
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	18.98
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.