Gene detail

Detailed information of BRAKERKREP00000015638.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_004209839.1, uncharacterized protein LOC101240545 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000015638

ATGAATGGAAAGTCAATTGAAGTAAAACACCAGATTGTTGTTAATCTTTCTATAAATAACACTACCATCGATTTGGAATGCCTGGTTGCCAACATTGTCCCCGAATATCAAATGCTACTTGGTATGGACGCAATACGACGGCTTGGAGGTGTCCAAGTTGGGAGAGACGGCGAAACCATAAACTTCAATGTGGAAAAACTATCTATCAGTGCTACTGCAGTCTCTCAAGAAAAAACGAATGAAGTATCCTCGCCTACTATTCAAAAGCTGATTGATAAAGACTTCGTAGCAGAATTCAAAAATGGTAGCTGGAGCGTGTCTTGGAAGTGGCTGATAGAACCACCAACTTTGACAAACAAAATTCCAAACTATCATATCTCTGATGACGTTAAAAGTGATTATGCAAAGGAAATAAGTGAATGGATAGCACAGGGATGGCTGAAACCATTTGAAGGGAGATGTAATGGCATCATTCCGTTGATGGCAGTAATTCAACgaaacaaattaaaagtacGTCCGGTGATGGACTACCGGGAGCTGAATCAATTTGTGTCCAGTCATACTGCAGATGGCGACGTTTGCAGTACCAAACTTCGCAACTGGagaaagttgggagaaaatctTGAAATAATCGATTTAAAGAAAGCGTATCTGCAGATTCGTGTCGACGAAGCACTGTGGAAATATCAAGTCGTGGAATATGAAGGGCAGCGTTACTGTCTAACAAGATTGGGTTTTGGTTTGAATGTGGCGCCCAGAATAatgactaaaattttaaaaaaggtattatCCGTAGACAAAGTTGTCGAGGCTGGGACGGACTCATTTATTGATGATATCATTGTCAATAATAACATAGTGTCAAGTTGCAGAGTTCGAGAACTCTTGGAAAAATATGGCTTGGATTCTAAGTTGCCAGAAAAACTTGTCGGCGGTCGTGTGCTTGGATTGCGAGTGTACAAACAATGCAACCAAGTCCGTTGGAAACGTGACAACATACCTAAAGTTCCTGAAGGAAAAATGACACGTCGGCAAATCTTTTCTTGGTGCGGACAGCTGACCGGACATTTTCCAATAGCAAATTGGTTGCGCCCTTCGTGCAGCTATCTAAAAAGGGTTTCGAGTAGTTGTGGATGGGACTCTTTTGTGGACGAACGTATTGTCAAATTAGTAAACAGTTTAAATGAAAGACTTACAAAAGAAGATCCCGTTCATGGGTCATGGAACGTCAAAAACACTTCCGAAGCAACAGTGTGGTGTGATGCAAGCAGCTTAGCCGTTGGCATAGTGTTGGAAGTGGCTGGGGAAATAGTAGAAGACTGTTCGTGGTTGAGGAAACAAGATGATACGGCTCACATTAACCTTGCAGAGTTAGAAGCCGTGATAAAAGGAATAAATCTAGCAACAAAATGGGGATTCGAATGTATTACCATAAAGTGTGATTCGGTTACTGTTGCCGGCTGGTTGAACTCCTTAATTATCGGTGACAAACCCGTTCGAGTACACGGTCTTGGAGAACCACTTGTCCGTCGCCGGTTGTCGTTAATTGAAGACCTTGTGAAGGAGTGcggtataaaattaaaactttttctggtAAAGTCAGCAGAAAATAAAGCCGATGCTCTTACGAGAGTACCGCAGAACTGGCTGCATTTAAACCATTCTGCAATGACAGCAAATGTTGTACCGCCTGATGTGAAGTCATTTCATAATCTTCATCACTTTGGAGTCAATCGAACCCTTTATCTGATGAAACAGACATATCCGAAGGAGAAGGTTAGTAGAAAAGACGTTGAATCAGTCGTGAAAAGTTGCGAAAGATGTTTATCGGTGGATCCTGCGCCAATTAAGTGGGAAGAAGGAAATCTTGAAGTTGGAAAGAGTTGGCACCGTTTAGCTATCGATGTAACCCACTATAAATCAGAGAATTATTTGTCTATTATTGACTGTGGAAAAAGAAGCAAGTTTGCAATTTGGAGAAAGCTACAGAACGAGAAAGAAACAACAGTGTGTTTCCATTTGGAAGAAATATTTCGAGAAAGAGGACCACCATGGCAAGTTCTACTTGACAACAGCAAGACCTTTCGCTCAAAACTCGTTAGTGAATTATGCGCAGAATGGGGAGTGTCCATCCTGTTTCGTTGCGCTTACAGGCCATCAGGGAACGGAATTGTTGAACGTCATCACCGCACTATCAAGCGAATGGCAGCCAGAAGTGGCAAAGATCCGCTAAAAATGGTATATTGGTATAACCGGGCTCCCAGGAAAAATGGCGAGGAAACATCGCTCCCCTACAAAGCTATATTTTCTTATGAGTGGAAACCACACACAATTTCTGCCAAAACCAACGAAGAAGTTCTCCACAATTATTTTCAAGGACAAGAAGTATTTGTAAAACCACCTGACTCGAAATGTACGAACGAATGGAACAGAGGAAAAGTTACAGATGAAGGACGAGGAGTTTCGGTAGAGATCAATGGATTGCCGAGACACATATCGGACGTCCGTCCTGTTCCCATCGCAGCCGATTTGCCTACTAGAGGATCGGAAGAACCCATTGCGGACAACCTGAATCACCGAAAATCGACGCGAATGCGGAAGTTTCCGAATAGATATGCAGACTTTGTGATCTAG

Transcript

BRAKERKRET00000015638

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001359 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000015638.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.