Gene detail

Detailed information of BRAKERKREP00000015686.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047144909.1, WD repeat-containing protein 48 [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000015686

ATGACTACAAACAGAGGAAGTTTTCCAAATAAGAAGAAAGCTGCTGTCTCATTTTCAGTCAGAGATGAATTTGAACCCAAAAATAGATTAGGAGTTAATGCTCTTCAATATGATCCAAGTTCGTCTTATTTGTTCTCTGCAGGTAGAGATTCAATAATCCGCTGCTGGAATGTTAATAATGAAAAGaaTCCTTATATTCAATCATTTGAACATCATACAGATTGGGTTAACAGTTTGGTGCTGTGTCGAAATGGAAAGACATTACTATCTGCATCATCAGATACAACTGTTAAAGTTTGGGATTCACGTGGTGGTTACTGCATGTCAACATTGCGTACTCACAAAGACTATGTTAAAGCTTTGGCTTATGCACAAGATAAAGAACTTGTTGCAAGTGGTGGAtatgataaacaaatttttctttgggATGTAAATGTGTTGACTGCACTCACTGCAACTAACAATACTGTAATAAcATCATCATTAAGTGGACAAAAAGAGTCAATATATAGTTTAGCAATGAACAACTCTGCTACTCTTCTCATATCAGGTTCAACTGaaaagGCTTTACGTGTTTGGGATCCACGAACTTGTACAAAGCTGATGAAATTAAAAGGTCACCTTGATAATGTAAAGACAGTTGTCCTGAAAGCTGATGGAACTGAGtGTTTGTCTGGTAGTTCTGATGGAACTGTCAGATTATGGTCTATTGGACAGCAAAGATGCATAGCAATTTACAAAATGCATGAGGCTGGAGTCTGGACTCTATTGACAGATGAGaacttcaattatttttactcgAGTGGTAAAGACAAAAAAGTGTTCTttactaatttaaagttaGATGATAATCCTGTGCAgttgtttgaagaaaaagctCCTGTACTTtcgatGCAGTTGGTTGAAAATCCACCTGGATTATGGGTAGCAACAACAAATTCAGATCTCACCTGTTGGcCAGTAATTTACCCTGATTCAGTATCAGTATCAGAGTCTGGAGTTGAGCTTTATTCATTTCCTTCTGCTGATAAAGGATGTAAAGTAATTATGGGAGCTCCTGGAATAAAAGATATACATGTTTGCAACAACAAGCGCCATATACTTACTAAAGATACTGTTGGAGATGTTGTGCTTTGGGATATACTTCAGGCAAGAAAATTGATCAACTATGGAAAAGTCAGCTTTGAAGATGAATGTATGAAACATCATGACAGGGTTTTTGTACCTAATTGGTTTACTGTTGATGCCAAAACTGgaATGTTGACAATCACACTTGATGAATCTGATTGTTTCTCTGGCTGGATGGTCACTGAGGATGTTCCTTCTCTTTTCGTTGAAGAGGTTTCCAAAGTCAATTATGGTGTATTGTTGCTTCAAGCTCTACTTGAAAAATGGCCAGAATCTCGTCGTGCAGCAGAAACTTTAACTGAAACGTTAGAAAAAGAAGCAGAAGAAATAGTCACTGGATCTGATATTAGTCTCAAAATTAATGAGaagTCACCTTGTAATGGGTTTTTCTCCATTCCGTTGCACACACCTTTGGTTTTTGGAGAAGGTGGTGGATGTGGGCGTACATATTTCCGTTTATTAGTTGGAGATGCAAGCGGGGAAAACGAGTCTGCTCTTCTGTCAGAGACAGTACCATCGTGGGTACATGATGTTATTGTCAAGAAAGTACAACCAAAGTTTAACAAGATAACGTTCATGTTAGCACCTTTAAGTAATGGTtccaaaaataacaaaagagatcGTTTGACTGCTAGTGATATGCTTCAGGTAAAGAAAATCATGGAGCATGTGTACGAGAAGTATATCCTTTCTGAAAATGATAAACCAATCACAATTCTTGCCGAGGAGCTGGCAGCTATCGCTGAAGCAAAGATTGAGCTCTATTGCAATGACgagCATCTGAATCCAAAGATGGATTTGCGAACCATTCGTCAATTTGTTTGGAGAAGCAGTTCCGAGCTTACTCTCAACTATCGCGTCCTCAAGTAA

Transcript

BRAKERKRET00000015686

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BH57	WD repeat-containing protein 48 OS=Mus musculus OX=10090 GN=Wdr48 PE=1 SV=1
Q8TAF3	WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1
Q32PG3	WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004683 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11816 all species →	DUF3337	Domain of unknown function (DUF3337)	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR021772 all species →	Family	WDR48/Bun107	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15361	WDR48, UAF1; WD repeat-containing protein 48	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.