Genomic Location: QPEY01000100.1:188883...220471
NR annotation: XP_047135846.1, integrator complex subunit 1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000016002 |
| Transcript |
| BRAKERKRET00000016002 |
| Protein |
| BRAKERKREP00000016002.1 |
| UniProt accession | Description |
|---|---|
| Q6P4S8 | Integrator complex subunit 1 OS=Mus musculus OX=10090 GN=Ints1 PE=1 SV=2 |
| Q8N201 | Integrator complex subunit 1 OS=Homo sapiens OX=9606 GN=INTS1 PE=1 SV=2 |
| Q9W1C5 | Integrator complex subunit 1 OS=Drosophila melanogaster OX=7227 GN=IntS1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003592 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12432 all species → | DUF3677 | Protein of unknown function (DUF3677) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022145 all species → | Domain | Integrator complex subunit 1, RPB2-binding domain | Interproscan |
| IPR038902 all species → | Family | Integrator complex subunit 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21224 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0032039 all species → | Cellular Component | integrator complex | Interproscan |
| GO:0034474 all species → | Biological Process | U2 snRNA 3'-end processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13138 | INTS1; integrator complex subunit 1 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of BRAKERKREP00000016002.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
