Gene detail

Detailed information of BRAKERKREP00000016054.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047132082.1, endoribonuclease Dicer isoform X1 [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000016054

ATGCAGGAAGCAAGTGTTGAAACATTTTCAGCAAGACCGTATCAGATAGAACTTTTGGATGCTGCAAAAAAATCCAACACAATTGTTTGTCTTGGCACTGGAACTGGGAAAACTTTCATAAGCGttatgttaataaaagaaaaacaaaatgagaTAAAGGGAACGTTTAAAGAAAGAggaaaaagaactttttttcttgtttgtacagTGCCTCTTGCATATCAACAAAGAAAAGTAATTGCTGATCATACCTCACTAAAAGTTGGCTATTATACTGGTGATATGGGTGTTGATTTTTGGAACAAAGAAAGATGGATATCAGAGTTTGACAAAGTTGATGTGTTTGTTATGACAGTACAGATTcttgttgatattttaactcattccattttttgtttgtatcaTATAAATCTGATAATCATGGATGAATGTCATAATGCCACAAAAAAACATCCTTATGTCAAATTAatggagttttttaaaaaatatcctaAGTCAGAACATCCACATATTTTGGGTTTGACTGCTTCAATCATTAATGAAAAGTATACTGGTGTAAATAATGAGCAatcaatcaaaacatttttagtaaatcgAATTGAAAGCTTGGAGAGAAGATTGCGATGTAGGTCTGTCACTTGTTCAGACCCTCAAGCAACATTGTCTTTTGCCACTAAACCAATTGAAACAGTTGTAACCTTTACAAATGGATTTTCAGTAAATGGTTTTCCAGAATTTGTTAGTATTATTGAGTTTATGAAATGTAACcttgaaaaacatttcaagcatttttttgatttaaaaattaaaaacaaagcaatgGTCAGTTTTACTGTTGATAATTTGTTACTTGAGAAACAGcgtttttcagtaaaaaatgcTTGTGCAATATCAGCTGATGCAATGAAGTAttgtaaagaagttttagaaTCTCTTGGTCCTTTATGTACCAACTGGGCTGCACAAATACTTCTCAAACAACTTGAAGATCTTGTTAAAACTTATGAAACTGAAGCTATTCATGTTTTTTCATCAGTTGAAAATGTTCTTCCGATTGAGCCACTTTTGACATCAAAAGCAGCAAGTTTTTTGCGTGATGTTttattagttgaaaaaaactactttcaagaattgcATTCAATAGTGTTTACACAGAGAAGATGTACTGCAGTAGTGCTCAGCAAGTTAATaaattatcaagttgaaaagGATGCAACATTTAATGGTTTAGCTAGTGAATATATACTTGGACATGCTTTTGATGCCAACATTTCCCTAATAGATGGTTGTATGAGATCAGCAAAGCAAAACTTGATACTAACAAACTTCAAacaagataaatttaatgtcttGGTTGCAACAAGTGTTGTAGAGGAAGGGCTAGATGTTCGTAAGTGTAATTTAGTTGTGCGTTTTGATGGTATCAATAATTATAGAGAGTATGCACAATCAAAGGGTAGAGCAAGAGCAAATGAATCTAAGTTTATCATAATGACAGGAATTGAACAAAAGTATGACACATACCAGCAGCTATATGTTATGCAAGAAATTgagaaaagtttgtttaatcaATGTCAAAACCGCACTCTTCCAACTGATGAAGAAATACAAGTTGAGATGTCTGACAATGAAGAAGAAATTCTTCCACCATATTTTTCATGTGATAAATATGATGCACCACGGATAACTAAAGATAATGCAGTCTCACTTTTATACAGatattgCTCTTGGTTACCATCAGATCAATATTGCAAAACAACTCCTAAATTTCAATACAAAGACAATTATTATGCAGAATGCTTGCTTCCATTGAACTGTCCTTTGcctaaaagaatttataagAGTGATTTGATGTCTACTCGAGATTTGGCAAAGAAATCTGTTTGCATGAAGATTTGCAAATCCCTCCATAAGCTTGGTGAATTAAGTAGTGAGCATTTACTTCCTACTAAGCAGCTTTCTGATGACAGCACCTCTGATTCAGatacagaattaaaaattaagaaaggAACACGCAAGAGCTGTGCACTCTTTCACAGAAAGGTAGTGTTAGTGATGAGCAAGGTGAAAGATTTCATTAAGTTATTTCTATTATGGAATAATGCTACAAAGGCAATTGGTTACATTTGTTGGATGCTGCATCAGGATGTTTCTGATATAGATTACAAGCAGGCTTCTCAAACCAAACACTTTTGGTGTAGCATTGTGACAAAGAGAGGACCTGCATTATGCTATGCTCAAAGCAACTTGAACATTGCAGATTTGTATGTGTGTAATGtataa

Transcript

BRAKERKRET00000016054

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q25BN1	Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3
Q8R418	Endoribonuclease Dicer OS=Mus musculus OX=10090 GN=Dicer1 PE=1 SV=3
Q9UPY3	Endoribonuclease Dicer OS=Homo sapiens OX=9606 GN=DICER1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF20930 all species →	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR048513 all species →	Domain	Dicer, partner-binding domain	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15271	HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3	EC:5.6.2.4	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.