Gene detail

Detailed information of BRAKERKREP00000016152.1 in Hydra viridissima

Genomic Location: QPEY01000102.1:251871...254788
NR annotation: XP_047128669.1, mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60476	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Homo sapiens OX=9606 GN=MAN1A2 PE=1 SV=1
P45701	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=MAN1A1 PE=1 SV=1
P39098	Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Mus musculus OX=10090 GN=Man1a2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001783 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01532 all species →	Glyco_hydro_47	Glycosyl hydrolase family 47	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001382 all species →	Family	Glycoside hydrolase family 47	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR050749 all species →	Family	Glycosyl Hydrolase Family 47	Interproscan
IPR036026 all species →	Homologous_superfamily	Seven-hairpin glycosidases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11742 all species →	MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004571 all species →	Molecular Function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:1904382 all species →	Biological Process	mannose trimming involved in glycoprotein ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01230	MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase	EC:3.2.1.113	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000016152.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

20TPM > 0

7Conditions

48.1Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	10	4.77	48.07
Whole	6	6	14.15	36.16
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	27.60	27.60
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	0.47	0.47
symbioic hydra M9 strain · symbioic hydra rep1	1	1	22.58	22.58
symbioic hydra M9 strain · symbioic hydra rep2	1	1	0.15	0.15
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	48.07
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	15.94
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	4.11
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	3.99
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	3.68
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	3.21
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	2.78
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	2.71
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.66
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.64
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	36.16
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	29.22
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	15.25
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	1.69
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	1.32
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	1.26
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	27.60
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.47
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	22.58
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.15
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.