Gene detail

Detailed information of BRAKERKREP00000016426.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047127956.1, tRNA (guanine(26)-N(2))-dimethyltransferase-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000016426

atggcGGATAAACATGTGGTAGACGAGTCAGGCGAGTTAAATGCAAGTGATCTTGTTGAAATTATCGAAGGAAAAGCCAAAATCCTATTTCCAAAATCTAATACAGTTTTTTACAACAACGTCCAGGTTTTTAACCGTGACATAAGTGTAGCAGTTataaaacgatttttaaaaacttggaataatgaaaacaagaaaactcTCATAAAAAAGACATCTAGCTCAGCTGAAAATAAGCTGAATGATATCAAATATGATActtataacaataacaaaaaagatattgagaaagaagaaaaaaaatctgaaaacgTTTGCAGTTTAATTGAACATGAGACAAGTGTTCTTGAAAAAAGTGTTTCTAATAGTGATAATATAACTGGCACAAATGAAACAGTATCTTGTACAATTTTAGAGGCTTTATCTGCAACTGGACTGCGAGCAATTAGATATGCTCTTGAGATTCCTAACGTTAAGATAATTGCTAATGATTTGAGCAATGaagctgaaaaaattattttgcgcaacattaaacacaataaagttgaaaattctGTACAAAGTAGCTTATCTGATGCAAGctTGCTGATGTATCAGCATAGATTTCCTTTGTCAAAACGGTTCCAAGTTATTGATCTTGACCCTTATGGCTCACCTAGTCAATTTCTTGATGGTGCAGTGCAAGCTGTAGATGAAGGAGGACTTCTTTGCGTAACTTGTACAGATATGGCTGGTTTATGTGGAAATCATGGGGAAGCAGCATATGCAAAGTATGGTAGCATGCCACTCAAGTCAAAGTATTGTCACGAAATGgcaTTACGAATTGTATTATCGTGTATTGATTCCCATGCTAATCGGTATAAACGATATATTGAACCTTTACTTTCTTTGAGTGCAGACTTCTACTTAAGGATTTTTGTTCGTATATTCTCAAGTCCATCTGAAGTAAAGCGTTCTGCTAGTAAGCGTTCTTACGTATTCCATTGCTCTGGTTGTGAAACATTTCATCTACAACCAGTTGGAAAAAGTGATGAAATTGGAAATAGTAAAAAGTACAATCCAGCAACAGGTCCTGTGGTATCTCAGCACTGTGATGACTGCAATCACATATTTAAGATAGGTGGACCGATTTGGTCAAAACCTATTCATAGCAAAAAGTTTGTGACAGAATTGTTACAAGAtatagaagaagaaaaagctTGTTATGCCACATTCCAAAGAATTCAAGgTACACTATCTGTTGTTTTGGAAGAGTTACCAGATCAACCTATGTATCTTGTAATTGATCATCTTTGTAATGTACTGCATTCTACCACTCCATCACATGCTCAATTCCGATCTGCAGTTATTCATGCAGGCTACGAGATTTCCAGTACTCATGCTAATCAAGCAGGCCTAAAAACCAATGCACCTGTGTCAGtcatCTGGGACATTTTAAGGTGCTGGGTAAAACTTCATCCTGtgaatcaaaagaaaatatcttcAAACTCTCCTGCTGCTCTGATTCTTAACAAAGAACCTAAGTTCTCAGCTAACTTTGAAGTAACACAATCTGCTTTTCCCAAATCAAAGACGATGAAGCTGCTACGCTATCCTGAGAACCCTGAAGCAGATTGGGGACCTAAAGCAAAagcaaAAAAGAATGGggatttttcatctttaacaGAAAAGCGTCAAGCATTTCAGGGAAAACGAAAAGCAGGATCCTTTGACCCAAACTTCTACAAACAGTTCCCATGTAAAAGATTCAGAAGAGaaTCAAAAACAATAGTTTGTAAAATGCATGGGTTTTCTCATTGCAGACAATCTCTACATGCATCTCGAATATTTTACCAAGCTTGTATGATCTCAACacaatcttcaaaaagtataaagaTTGTCAATGAGGCACCCCTTATAGACTATGATGTGTTGGTTAAAAATAGATTGAAGAAAAGTGATGCTCGTGTAGATCCAGGTAGTATCTATAAAACATACCCGAATGCTGAGAAGGCTCTAATTGGgaaaaatccaaaattaaGgTTTGTATGGAATGAGCAAGACTGCACTAACTCGTTTCCTTCGTCTCCAGAAGAAGCGCGTCTTGATTTGCTCAATTACCTCGAACAGCGTGACATGTGGATGAGGAGAAGAAACTTGATAATACCTCGATTTTGTGTTGGCAGTATTATAAGAGTAACAAGAGCAGACCGTTTAGCTCCTGAAGGATGGACAAGATTTGTTGGTTTATGTATTCACATAAGTTATAAGCAAAATATGAAAGGAGCAAACTTCACTTTAAGAAACGTACTATTTGATGAGCCATTAGAAATTCGGTATCCATTTTATTCACCTCTGATTCAAAAGATTGAAGTGTTACGTCACGAAAAATGGGAGAACGAATTGCATTGGAACGGTCTTAAGTTTCTGCGTGATTACCCTCCCGCTTATAGTACTGTAGATGAAAACATGGAGGCTGAAGAATATACGATAGAACCTGTTATTAGACTTTGGACTGACGAAGATAAAAATAGGGTAAAAGGTTggtttcaagaaatatttaattctcGAAAAAGGTGA

Transcript

BRAKERKRET00000016426

Protein

Uniprot

Uniprot term	Description
Q9NXH9	tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens OX=9606 GN=TRMT1 PE=1 SV=1
Q3TX08	tRNA (guanine(26)-N(2))-dimethyltransferase OS=Mus musculus OX=10090 GN=Trmt1 PE=1 SV=3
Q9SRU7	tRNA (guanine(26)-N(2))-dimethyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g02320 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01245	Ribosomal_L19	Ribosomal protein L19	Family	Interproscan
PF02005	TRM	N2,N2-dimethylguanosine tRNA methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR042296	Homologous_superfamily	tRNA methyltransferase, Trm1, C-terminal	Interproscan
IPR001857	Family	Large ribosomal subunit protein bL19	Interproscan
IPR002905	Family	tRNA methyltransferase, Trm1	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR038657	Homologous_superfamily	Large ribosomal subunit protein bL19 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10631	N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0160102	Molecular Function	tRNA (guanine(10)-N2)-methyltransferase activity	Interproscan
GO:0002940	Biological Process	tRNA N2-guanine methylation	Interproscan
GO:0004809	Molecular Function	obsolete tRNA (guanine-N2-)-methyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan