Gene detail

Detailed information of BRAKERKREP00000016465.1 in Hydra viridissima

Genomic Location: QPEY01000106.1:492118...494210
NR annotation: XP_004211926.1, ornithine aminotransferase, mitochondrial [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VW26	Ornithine aminotransferase, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Oat PE=2 SV=1
Q3ZCF5	Ornithine aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=OAT PE=2 SV=1
P49724	Ornithine aminotransferase, mitochondrial OS=Drosophila ananassae OX=7217 GN=Oat PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003449 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR050103 all species →	Family	Class-III Pyridoxal-phosphate-dependent Aminotransferase	Interproscan
IPR010164 all species →	Family	Ornithine aminotransferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11986 all species →	AMINOTRANSFERASE CLASS III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004587 all species →	Molecular Function	ornithine aminotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010121 all species →	Biological Process	arginine catabolic process to proline via ornithine	Interproscan
GO:0019544 all species →	Biological Process	arginine catabolic process to glutamate	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00819	rocD, OAT; ornithine--oxo-acid transaminase	EC:2.6.1.13	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000016465.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

21TPM > 0

7Conditions

25.0Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	10	7.51	24.99
Whole	6	6	16.87	22.54
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	9.69	9.69
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	11.36	11.36
symbioic hydra M9 strain · symbioic hydra rep1	1	1	10.50	10.50
symbioic hydra M9 strain · symbioic hydra rep2	1	1	0.72	0.72
unannotated	1	1	6.09	6.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	24.99
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	23.74
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	21.86
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	13.87
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	10.90
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	10.63
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	9.64
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	8.12
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	6.07
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	5.45
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	22.54
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	22.52
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	18.38
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	16.70
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	15.49
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	5.59
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	9.69
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	11.36
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	10.50
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.72
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	6.09

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.