Gene detail

Detailed information of BRAKERKREP00000017015.1 in Hydra viridissima

Genomic Location: QPEY01000114.1:209563...210411
NR annotation: XP_002162295.1, phosphatidylinositol transfer protein alpha isoform [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJ54	Phosphatidylinositol transfer protein alpha isoform OS=Bos taurus OX=9913 GN=PITPNA PE=1 SV=3
P48738	Phosphatidylinositol transfer protein alpha isoform OS=Oryctolagus cuniculus OX=9986 GN=PITPNA PE=3 SV=2
Q00169	Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens OX=9606 GN=PITPNA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004998 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000017015.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000017015.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

19TPM > 0

7Conditions

487.3Max TPM

165.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	9	111.15	440.57
Whole	6	6	238.73	444.95
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	284.86	284.86
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	308.68	308.68
symbioic hydra M9 strain · symbioic hydra rep1	1	1	487.32	487.32
symbioic hydra M9 strain · symbioic hydra rep2	1	1	295.45	295.45
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	440.57
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	367.87
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	295.44
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	267.21
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	228.49
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	218.21
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	157.82
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	23.40
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	1.76
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	444.95
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	204.76
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	200.14
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	199.61
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	196.09
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	186.82
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	284.86
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	308.68
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	487.32
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	295.45
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.