Gene detail

Detailed information of BRAKERKREP00000017157.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_012558683.1, lysine-specific demethylase 2A isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000017157

ATGGATGGCTTCGGACGCAGTTTGagagcGAGAGaggcaaaagtttataatgatTCAAAAATAGATGATGAGATTGAAGGAAAGAGACAATTCTCTGTGGAAGAAAAGCTTgtagataaaaagtttaatgaaaatttaaaagatgtcATACTGGAAATGGAGGGCCAAAatttcaatttgaaatatGTTCAAGCAAATGGTTTCAATATCCCCATACTTTTTAAGCGTAAAGATGGTCTAGGACTGAAAATGCCAGATGCAGATTTGTTCAGTGTGATAGATGTAAAGAGCTATGTAGgtgCACGCCGAACAGTTGATGTGTTTGATTGTGATACACATGAGGCCATCCAAATGAGCGTGCATCAATGGGTCAAATACTATATGGGGCTagagagagaaaaaatcttaaatgtaACAAGTCTAGAATTCAGTCATACTGGACTTGACAGGCTAGTGAAATGTCCTGATATTGTTGAAGCTGATCTTGATTGGGTACAAATGGTGTGGCCAAAACATCTTTTATCAGAACAGAAGGATACCACTAATGTTGTTGAAAATATGAAGTATCCTAAAGTGCGCAAatattgccTGATGAGTGTTGCTGGTTGCTATACAGATTTCCATATTGACTTTGGAGGCACCTCAGTATGGTATCATATTCTTAAAGGAGCTAAggtgTTTTGGTTAATCCCCCCTACAGATGAAAACTTGAAGTATTATGAAGATTGGGTTTTGTCTGGTCGTCAGCAAGATATGTTTCTTGGAGATGTTGTAAATCAATGTCACCGGGTTCATTTAGTAGCAGGAGATACTTTTATGATTCCAACagGCTGGATACACAGTGTTTATACTCCAGTGGACTCTCTAGTGTTTGGTGGGAACTTTGTTCACAGTTACAATATTTCTCTTCAACTAAAAGCAGCCAAAATTGAAGAAACTACTCATgttcCTCGCCGActttgttttcctttttttgctGAACTGCATTGGTATGTCATAAAAGCTTATGTTGATATACTTGAGCGAGATCTAGATGAAAGAAGAATTCTTGAATTTGAAGCTGaagatgaaaactttttgaaagctGTAAAAGATGATGCTGTGGAAGAAACCAAAAAAGCAAAGCAAAAATGGGcaaatatttatctaacaaCATATGAACtaaaaggtttaaaagatCTGTGCAAATCATTTCGTATATGGCCATTTGCAAAGCTCAACTTTCCAAAGGATTTAAAAGATGATGGAGTGGATCTTATTGATAGATTAgaagAGTTGCTACAACACCATGAAGATGACGATCAATTTTTGGCATGTCAAGGTGtcaatattttcaagcaaTTAAACGATCATCTTGATTTTCCTGACCAGAAAAATCTATCGTCTCCTGTAAATGTTCCTTTGGAAAATTCGCCAATCAAAAAACTCACaaccaaaaaagttgtatcatctaaaaaaattccgTCAAAGCcgatgtttaaagaaaaacttaacaagtatttggaaaaaagaaaaattccttTAGAAGATATTCCAAAAGCTATAAccagaaataattttaaaaatgaaattcaatctcccttgttaaaagataaacgCAAAGTTCGCATAGAATCTGAGAAGCGAAAAGAGCATGGTAAGAAGAGCAAGACAGTTGTGCGTCGTGTACGTTGCCGTGTTTGCGAGGGATGTTTACGGAAAAATTGTGAAGAGTGTCGTTATTGCTTGGATATGATCAAGAACGGTGGACCCGGTCTATTAAAGCAGTCTTGTGCAAGGAGATTCTGTCAAAATcCCAAACTCCCTGCGTATGTTGAATGTTACATCTGCCATAATGGACATAAAGAAGATGAGCGTATACTAATGGAATGCTCCATATGTTCTGAGATTGTACATCCAGAATGCTTAAAGAAATCTTCACCATGCAAAATGTCAAAGAAAGTAAACAATTGCTGGGAGTGTCCGAAATGTTGCACTGACAAGAAGgcAGAGAAATTTTCTCCTCAAAAAGCGAGCGGTCACATGAGCGAATATAAGCGCAAGATGGCTCTCAAGCAAGAAGAATCAAACGACCTTAGTCCAGGAGAAAATCATATTAAACCCGAAAAAtctctatcaaaaaaaaagcccATGTCTAATAATCAAATGGCTAACAAAGTTCAAAACTTGaagcaaattttacaaaaagcaaaactaAGTGTAGATAGGATACACAACATCGATATAAAAGCGCCCAATGGCCATAATCACGAAACGACTTCTAAAGAAAGTAAGAGTAAGgCGCCTAAACACAAATCGTTTGACAAAGTTCCCGAAAATATCCGATGTCCGTTGATTACGCACACTGCAATTACGGTTGTTCGTCCTGGACCATTGACTCAGCACGAGACTTGCATAATGACTGACGATGGAAAACATCCGCTAAATAGAAGACTATGGGTTCAGGTTTTCATGTATTTAAGTAAAGGTGACATTGCAAATTGCATGTTAGTCTCTAAAGCTTGGAACCAATGGTGCTTAGATAATCGCCTGTGGAGCGAGATAGATATATCTAATCGGACTTTAACCACTTCGATGCTTTGTGGAGTTGTTAGGCGTCAACCTTCTCTATTGAAACTTTCATGTACAAATACGACAGCTAAACAATTAGAATGGCTTTTGAGGCGCTTGCCTCGTTTAGAGGGTATGGATTTAAGTTTAAGCACTGCTGCGACAATATCAGCTCTCATGAGAGTAGATTGTTCTCAGTTGAAGTATTTAAACTTATCATGGTGTAGCgctatttatgataaatttatgaTACAGTTACTCGGCCCTATTACACTAAACCCTTTATACTCAAATGAAAGCAGATTACCTGGTCTCGAAGACCTCATATTAGCCGGATGTGATATCTCGGATGATACAGCTGcttatatacttaaaaatctAAGATATTTGCGCCGTTTGGATATAAGTTATTGTTCTCGTGTAACCGTTGTAGGTATGGAAGCTCTTATTAAGAATGAACACGTATCTAGTGGTGTTTTACAAGAGGTTTTGTGTGAAGGATGTTCGTTCTcagaagaagattttataaTGCGTTTCAGAAACTCCTATGCTGTTACCAAGCCACTATTATGCTCAGCCAGTTAA

Transcript

BRAKERKRET00000017157

Protein

Uniprot

Uniprot term	Description
Q9Y2K7	Lysine-specific demethylase 2A OS=Homo sapiens OX=9606 GN=KDM2A PE=1 SV=3
P59997	Lysine-specific demethylase 2A OS=Mus musculus OX=10090 GN=Kdm2a PE=1 SV=2
Q5U263	Lysine-specific demethylase 2A OS=Xenopus tropicalis OX=8364 GN=kdm2a PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02008	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF17811	JHD	Jumonji helical domain	Domain	Interproscan
PF02373	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF16866	PHD_4	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR002857	Domain	Zinc finger, CXXC-type	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR041070	Domain	Jumonji, helical domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003347	Domain	JmjC domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050690	Family	JHDM1 Histone Demethylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482	Biological Process	protein demethylation	Interproscan
GO:0032452	Molecular Function	histone demethylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10276	FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11	EC:1.14.11.27	Chromosome and associated proteins	ko03036	deepkoala