Gene detail

Detailed information of BRAKERKREP00000017399.1 in Hydra viridissima

Genomic Location: QPEY01000121.1:172621...180793
NR annotation: XP_002159841.1, transmembrane protein 41A [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08D99	Transmembrane protein 41A OS=Bos taurus OX=9913 GN=TMEM41A PE=2 SV=1
Q502G2	Transmembrane protein 41A-A OS=Danio rerio OX=7955 GN=tmem41aa PE=2 SV=1
Q9D8U2	Transmembrane protein 41A OS=Mus musculus OX=10090 GN=Tmem41a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002163 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09335 all species →	SNARE_assoc	SNARE associated Golgi protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032816 all species →	Domain	VTT domain	Interproscan
IPR045014 all species →	Family	Transmembrane protein 41A/B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43220 all species →	-	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for BRAKERKREP00000017399.1 in Hydra viridissima.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27310	TMEM41; transmembrane protein 41	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000017399.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

25TPM > 0

7Conditions

143.3Max TPM

57.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	14	70.80	143.29
Whole	6	6	42.76	53.23
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	39.37	39.37
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	34.68	34.68
symbioic hydra M9 strain · symbioic hydra rep1	1	1	21.88	21.88
symbioic hydra M9 strain · symbioic hydra rep2	1	1	2.18	2.18
unannotated	1	1	23.04	23.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	143.29
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	141.58
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	115.02
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	113.53
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	109.33
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	101.68
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	100.75
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	80.70
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	75.17
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	68.50
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	63.37
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	61.39
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	54.09
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	46.01
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	53.23
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	46.56
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	42.93
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	40.94
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	39.85
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	33.05
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	39.37
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	34.68
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	21.88
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	2.18
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	23.04

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.