Gene detail

Detailed information of BRAKERKREP00000017477.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_012559041.2, DENN domain-containing protein 3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000017477

ATGCCAAAAAGCAATCTTATAGACTTTTGTGTTGTTATTGGTTCAAATAAAGACACAAATTTGGAGAAGCTATCTGATGAGGGTTCTCATGGATATGGTCCATATAAACAGAACGTATTGGCTGTGCTTTCAGAAAATATAGCTTATTTTCCTGAGTCGTATCATGTAATTGATGGCTCCCCATATTATGTTAGTAATGAAGTTATATGCCCTAAAGCCCATAATGAAGAAACAAGATCTATCTACAACCGATCGATTTCTTGTACACCTGAGGTTTTTCCGTTTTCAATGGAAGTTGTAAATAATCTCACCTCATTTTGTTTCCCTTCTGGAGGCTATGCATATACAAGTCCACAACCTGTTCAAGTGTCATTTTTGGTTCTTACTAATATGGAAGGTTCTCGAACCTATGCTGTCTATTTAACTTGTACTCGTGAATATGCAGCTACATCTGATGAGCAAGgagttacaaaaattacaaacaacaACTTGACTGAAGAAGAATCTTTCACACTGCATGTTCCTATGTGCTTTTGCTTAGTTTCATCTTATCCTTATTTTAATACTATGAAAGATTGTCTTTCATCATTAGAACCATTTTTGAGGAGTAGTGAAGAAGATCTGTGGACACCAGTAATGAatcttgctttttgtttatcaactACTCCTGTCCCACCTCCTGGTCCTCTATCTGTTCAGATTTCTCTCTTAGGCATAGACCATGTTATTCATCCATCTGATGAAACAAATCATCGTGTAATAGACATTGATCTTCGTCTCCctttatttatcttaactCCTAATGATAttgtaaaagtaataacaTGTCTGCTTACACAACAAAGAATGATATTCATGGCTACAGATTATTCTATGTTGGTGATGGTTATTGAGGCATTTTTAACATACATTGATCCTTTCCAATGGAGATTACCATATGTTCCTGTGTTACCAGATGCACTTGCTGATCTGATTGAAGCAACTGGTCCTTTTATAATGGGAGTACACAGTTCCTTGCGTTCTCAAGTGAAACAAGTTCGAAAGGAGCCAGATTCGTGGATTGTTTTGATTGATTTGGATAAAGGTATTGTTGACATTAATGCAAATACCAAAGTTCCCCCCATGCCAGACATTGTTTCCCAATCtcttattattaaacttaaaaagtgtTCACCAATATTTGACATGAAGCTGGTTTCAGTGCCTACTGTATTTTCAATTGAAGCAATCAAACAGCAGAAAAGTGAGCTCAtggaaaaatttaagtttgataTAAAAGAGGCTTTCTTTGATATGCTGGTTAGTTTATTTGGAGACATATACAACTATATGTCTGAACAGTTTTTTGACAAAGATGCATATTTGCAATCTAAGCATGAAGATGAAAAGgcattttttgaagaagttcTTAGCTCTGACACttttaacacatttattgAAGATCGAATCAAGCATAGAGATCGTAGAGATACCTTTTTAATATTAGGAGAACGCCTTTCAACTCAAAGAGTAAGTACAAGTCGTTCACGTAGTTCTTCTGTCAAGCAGCCTATTCACTTAAACTCTgtgtttgagaaaaaatctatttacaaAATGCCTAATAAATTTAGAGAAAGTTTATCAACAGGGAGGTACTATAATAGTCATTGTGATCAACTGACTTTGGTACTTCAAGGAGCTGCCAACATGTCAAATTCTCTAAAAGCTAGTTACCTTTATTTACGAGGTTTTGCCCAGATACTTTCTGGTTACAAAATTGAAGGTTTGCGTGATCTTTACTCTCTTTACTCGCTGTCTCCTGATCTCTTTCCTGCTGAAGATATTCCTGAGGTCATTGACAGTCTGGATGCTTTTCAgcttaaacaaataaaaaaagagccGTTTTATCAAGAGACTGCAATTTTAAGAACAATTTCTTGTAACTATTCAAATACAAAAGGTCGCGATGtccaaaaatttaacaactctGACATAAAACTTGACAGAGAAGTGTTTTTAAAACGAATGGTAACATTGAAAATAACTGAAAGCGAGGAAACTGCTCTATGGCTGTTTCAAGTATTGTTGAATGAGAGTAATGAGAATGCTGACTTTATTGAACCTGATCAGTTCACTACATTCTATAAGATGTATCAGTTTATGCTGATGGAAAACCGAGAAGTTTCTGGagttaaaATTGATGTTGCAGATCGCATAATGAAAGTTTCTGCAGAGGTCAGCACTGGAAAAGGAATGGGTCGCATCGTGCTCACTACTAAGCATTTATTGTTTGTGCAGCAAGGCGCAAGAGAATATTCAATCATTGCACATCTTTGTGATATTAAAGAACTTGTCAAGTATCAACAGCTTTCTGCTTTCCTTACAGGAATTCAAGCGCTAAGGATAATTAATAGCGATCGAAATGTCCCTCCGTTTTATGCTAGCTTGAAAGAGGAAACAAATGTTTGGATTATGTTGCTCTCTGAAATGGTTGCTGGTCACAAAGCTTCGATAGCTTTAAGCAATCCAAAAATGATAGAGCAAGCTGTGAGCCATGTTCAAATTGCACAGACATTATTAACAATGGGATTTCCATCGTCTGTTGTTGCAGgtGTTTGTTTGATATCTAATCGCAAGGTGGAGGAAATAGGAAGCTTATCAGAGGAAACTCGTGAATCATTGATTATGAGGCTAGATCCATGTGCTCGTGAAGGCAAGCGTACGACCGTGATGAGTATTGCCTATGTACCCGGAAATATTCAATATGTTAGCACAATTTGGTGTGGTATGGGTTCTGGGACAATTGTTGTTTATGAAACTGAAAAATGGCAACACATATCTGAACTGAGATGTGCAAAGAGTCGTATAAGCTGTCTTCGATATGTTGATATGAATCAAGTTTGGGTCGGCTCGTTCGACTCGGTCATCTATGTTATTAATACTGTGACTACTAAATCTGAGCAACAATTGCAACGTCATTGGCGATCAGTCTCAGATATTGCCATAGATGACTCTCCAGATAGTCATGCGTTGATATGGAGTTCAGGATTTGACGGGCAAGTCTTCTGTTGGCATTCTAAAACGCGCGAGTGTATAACTTCATTTACCTTGAATGACGTGCGTACGCTTCGTCAGATCATACCGACCAGcgataaaaaattatggtgCATTACCTTAGACAACATAATTGTAGTCGATGTGTCTTCTAAAGAATGCCCGATTCTGCGAAACTTAGTTGTACCGAATAAAAAGGAACCAGTTCATTTCTCGTACTCTATGAAATTAAACGATCAAGAAATATGGATCGGAAGTAAAACAGAGGGGGGGCTATTTGTCTGGAACACTAAAACTTGTAAGTGTGAACAAATAGAGTTAGAGTCGCGTGTTCAAATCTGCAGTATGATCTTCGCCGGAGAAAGCGTTTGGATTGGCAACAAAGACGGCAAGGTGTTCGTCATGTGTCCAATAACTAAAGTGATCGATCGCGAGCTCAACGCGCACACTGACAATGTTATAAGTATTTGCGAGACTCGGAAAGGCTACGTTATTACTGGTTCCTCCTCTAAAGACGGACAGCTCTGCGTGTGGAACCCTGTAATGGGTTTTGAGGTCATCGATGGAAAACGAAGATACCGAAAGAATACACTCACTGATATTCCCTCGACTTTTGAAGTGGTAGATGAAAAGGTCTGCACAACAGAAGTTTAA

Transcript

BRAKERKRET00000017477

Protein

Uniprot

Uniprot term	Description
A2RUS2	DENN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=DENND3 PE=1 SV=2
A2RT67	DENN domain-containing protein 3 OS=Mus musculus OX=10090 GN=Dennd3 PE=1 SV=2
Q7Z401	C-myc promoter-binding protein OS=Homo sapiens OX=9606 GN=DENND4A PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456	uDENN	uDENN domain	Domain	Interproscan
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001194	Domain	cDENN domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20162	DENND3; DENN domain-containing protein 3	-	Membrane trafficking	ko04131	deepkoala