Gene detail

Detailed information of BRAKERKREP00000018360.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047145074.1, uncharacterized protein LOC101240546 isoform X2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8MW92	PHD finger protein 20-like protein 1 OS=Homo sapiens OX=9606 GN=PHF20L1 PE=1 SV=2
Q8CCJ9	PHD finger protein 20-like protein 1 OS=Mus musculus OX=10090 GN=Phf20l1 PE=1 SV=2
Q4V9H5	PHD finger protein 20-like protein 1 OS=Rattus norvegicus OX=10116 GN=Phf20l1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20826 all species →	PHD_5	PhD finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR043449 all species →	Family	PHD finger protein 20-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15856 all species →	PHD FINGER PROTEIN 20-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0044545 all species →	Cellular Component	NSL complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000018360.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000018360.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

15TPM > 0

7Conditions

23.8Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	5	2.73	19.76
Whole	6	6	20.27	23.85
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	15.33	15.33
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	14.79	14.79
symbioic hydra M9 strain · symbioic hydra rep1	1	1	9.99	9.99
symbioic hydra M9 strain · symbioic hydra rep2	1	1	0.70	0.70
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	19.76
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	19.49
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	7.74
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	1.81
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.34
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	23.85
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	22.03
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	21.34
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	21.32
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	17.05
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	16.02
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	15.33
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	14.79
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	9.99
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.70
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.