Gene detail

Detailed information of BRAKERKREP00000018461.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047143811.1, 39S ribosomal protein L12, mitochondrial [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1USC7	Large ribosomal subunit protein bL12 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583 / Herrer 020/F12,63) OX=360095 GN=rplL PE=3 SV=1
A9ISF8	Large ribosomal subunit protein bL12 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rplL PE=3 SV=1
B4R8K4	Large ribosomal subunit protein bL12 OS=Phenylobacterium zucineum (strain HLK1) OX=450851 GN=rplL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16320 all species →	Ribosomal_L12_N	Ribosomal protein L7/L12 dimerisation domain	Domain	Interproscan
PF00542 all species →	Ribosomal_L12	Ribosomal protein L7/L12 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000206 all species →	Family	Large ribosomal subunit protein bL12	Interproscan
IPR014719 all species →	Homologous_superfamily	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Interproscan
IPR036235 all species →	Homologous_superfamily	Large ribosomal subunit protein bL12, oligomerization domain superfamily	Interproscan
IPR008932 all species →	Domain	Large ribosomal subunit protein bL12, oligomerization	Interproscan
IPR013823 all species →	Domain	Large ribosomal subunit protein bL12, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45987 all species →	39S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02935	RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.