Gene detail

Detailed information of BRAKERKREP00000018577.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047137017.1, unconventional myosin-X-like [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000018577

ATGCATCAGTCCAGTATTGATGGAGTGGAGGATATGGCAAAGCTTGGTGATTTGCACGAAGCAGCTATTTTATACAACCTACAtcaaagattttctaaaaaccaaatttatactcaCATAGGTTCTATCTTAGTAGCAGTAAACCCCTATAAAGTAATACCTGGTGTATATGAGATTAACAAAATGCATgaatataacaataaatatcttGGAGACTTATCACCTCATATCTATGCCATCGCAAATGAAGCTTACTATGCATTATGGAGAAAAGGTGGAAGCCAGTGCATTTTAATCAGTGGTGAATCAGGTGCTGGAAAAACAGAATCAACAAAACACATTCTTGGTTTTCTTTCTGAAATGAGTCGTAAGGTATCTCAAAAAATAGATAATCAAGATGATGATAAGAAAGTTGAAGAAATTATAATTCAGAGCAGTCCAATATTGGAAGCTTTTGGAAATGCAAAGACGGTTTATAACAATAATTCCAGTCGTTTTGGAAAGTTCATGCAGCTTGACTTTTCTAACAATGGATGCATCACAGGCGGAACAATTATAGATTGCACATCTCTGGAGCAAAAAGcttTGTTCATGATCAGCACCCCAGATAAATACCATTACTTACGACAAAGTGGATGTATAGAAGACCCAACCAttaatgataaagaaatttatcaaaGTGTTATTAATGCCATGAAGGTGATTGGTTTGTCTAATGAACAGATAAGCAATGTTCATTATGTTCTTTCAAGTATCTTACAATTaggaaatatttctttcattacaACTGGCGGTGCACAGATAGACAACAAATATGatcttgAAAAACTTTCTGAGCTGCTGCAAATTGATATTTACTTATTGAATGATGCATTGACACAAAAGAGTATGAATTTACGAGGAGAAGAAATTCTTAGCCCGCTCAGTGTTGAACAGGCTATTGACGCAAGAGATTCCATAGCAATGGCGTTATTTCAAGCATGCTTTAAGTGGATTATTCATAATATCAATATAAGATTGAAAGGAAACCAGAGCTTTTATTCTATTGGAGTTTTAGACATCTTTGGGTTTGAAAACTTTCAGatcaaTCGGTTTGAGCAATTCAACattaattttgcaaatgagaAGTTGCAGGAGTACTTTAATAAACACATATTTTCACTGGAACAACTTGAATATAACCGGGAAGGTTTAGAGTGGACTGACATTGATTGGAATGATAACGGTGAATGTTTAGATCTGGTAGAGAagAAACTTGGCATACTTTCACTAATTGATGAAGAGAGTCATTTTCCTAAAGGAACTGATGAGTCACTATTAAAAAAGCTTCATGAAAATTTAGCAaacaatactttttatgtCAAACCACGTGTTGCAAATAGCAAATTTGGCATCAAGCATTATGCAGGGGAGGTGTTTTATGACTGTAATggatttttggaaaaaaatcgTGATACATTCAGGGATGATCTTTTAAAGACATTAATGGAGAGCAGatcagattttatttatgacTTGTTTGACAAGTTGAAAAGCGATGATTCAAGTAGTTCTGCAAAATCCCTAATTAATAAGAAGCCACGCAAACCAACTGTCAGCTCACAATTTAAAgattCTTTGCTTTCTTTAATGCTGAATTTGAATAGTGCAAACCCTTATTTTGTTCGGTGCATCAAGCCAAACAATGCCAAGACAAAAGATTCATTTGATGGAGAAATAGTGCTTAATCAGCTAAAGTATTCTGGAATGCTAGAAACTGTAAAAATACGTAAAGCAGGGTTTCCAGTTCGTCGGTTATATGAAGATTTTATGAGGAGATATCGAGCTTTATTCTACAAGgtcaagtttaaaatgttagtgGATGCAAAAGATAACTGCATCCTCATTCTCACACAGTTTGACCCTCGTCGTGAACTCCATCGTATTGGTAAAACaaagatatttttaaaggatAAACTTGAATCTGAAATTGAATTACatcgaacaaaaaatataaactgtgCAAGTAGCATTGTGTTAAACTGTCTTGTCGGATATCAAATACGTAAAAATTTCCTTAAAGTCAAATTTTCAGTCttaatcattcaaaaaaactacaagtgtcattactattgcaaaaaatttatggaaaaGAAGAAAGCCTCCATCACAATTCAAAGGTTTGAGCGCGGTAGACAAGCAAGAAAACTTTACGCAAACATGTTAGAACAAAAGCGTATTGAAGAAGAGAGAAGACGTGAATTAGAAAGACGCAGAGAAGAAGAACGCATCAGagaaatggaaaaattggAGCAAGAGAGAAAATTACAAGAGCTTGCTGAAATGAAGGAAAAGAGGGAAGAAGAGGAGAGAATTCGCTTAGAACAAGAAGAAGAGAAGCGATTGAAAGATGAGCAACAACGACAAGCTGAGCTTGCAAAACTTAAACTCTTGGAAGAAAATAGAAGAGCTCTTGAGGAACAGAAGAGACTTGAAGAAGagatgaaattaaaagaagaagaagaaaaacgCAATGCTCAAGAAGAAGCTAAGAAacttaaagaagaaatggATGCTCAGGAAATTCAAATAGAGCTTGAGCGTCAAGCAAGAAAAGCTACTGAAGATGCTCTTAGAGAAATGGCTGAGCTTGATGCACAATTGCAGATTGAGGAAGCACTTGATGAAGAGGAAGACTTTGATGATGAAAGTATTTCACGTATGATGAATTTAAATGAGGATACCTCTGTTGTTGATCATGCTACTTACGAAGGATACCTTTCACTTAAAGgTGGAATAATCACCAATGCGAAGAAACATTGGTGTGTTCTTAAAGATGATACACTAATGTGGTTCCGTGGAAAGCAGaaaggttTAAAGAGTGGGTGGCTGCTCAAGAAAGGAGGAGGAAGCGGAACTTTATCTCGACGTAACTGGAAAAAGCGCTGGTTTATTCTTAAAGACACAGTTCTAACATATCATGAAAATGATCAAGATGGCTCTAAAGTTTTAGGAACAATTGATTTGAAAAGTTGTCGgCAAATAGTGGATAGCAGCCAGAAAGACAATGCTTTTAGTATTATCATGCCATCAAGATCTTATCATCTTGTTGCTGAAACTCCCCAAGAATGGGAtGATTGGTTTGGAATTCTAAATCGTGTACATAGAGCTACTGATTCAGAGTTGTGTCAAATGAAGGAAGAGAGtgcaaacattaaaaatgctGTGgGTACAATTGAGACAGTTGTAATTGAAAGTATCTCAGTAGACCTCATTGAGGAAAAATCTCAAGGGTTCAGTGTTATTACTGCCAATCGAGTTTACACGTTTGTAGCAGAAAATTCAGAAGATGCAGAGAATTGGGTCAGAgtcttggaaaaaagcaaaaaaagacaattggaGGAAGGAACAAGTGTTTCTATAGAAAAAggaTGGCTGTTGAAGTTAGCACCAAAAGAACAAGCTCGtgataaaaaaagatggtttgTACTCAGCAATAATTCCCTTGACTATTTTAAGTCCCCTGAGAACAATTCTTCAAAACTTGGctcaattgttttaaacagtttgtgTACAGTAATTCCTCCTCCACCTGTGGATGAcattaaatgtaaagaaacAGgtCGATGGGAATTTGTTGTAAATGGTCGAAAACGATCCTACAACTTGGTATGTCCAAATCATGAATTGGCCGTTCGTTGGCAAGTTGCAATACAAGAGgTCATTGACAATAAGCCTCCTGTAGAAACGCCTTACCAAAAACTTATGAACGAAATCATGAACTGCAAAAATGAATCAATGGTAAATAGAATTTATCGTGTTAACCCACTACTGAGCTTCACTAAGCAACCGTTAAAGATGCCATTGCTGCCTTTACCTTATGGTTATTCACTTGCATTAAAAGCACAGAATAAAGGTTATGGAACGTTTTATGAGGAAtctctgaaaatatttaaatgtttgcaaGAATTAGAAAATGTGGCTGATCCTATTGCTGTTACGCAGGGTATTCTTCAAACCTGTCATGATCTCAATCAATTGAGAGATGAGATTTATTGTCAACTTATCAAACAAACTAGTGGTCTTGTAGAGCCGAATAGCATTTCAGCACTGCGCCATATGCAGgtACTTTTATGCATGTCTTGCACATTCCTTCCATCAAGAAAAGTCCTTAGATTTCTAACAGCACACTTGAAACGGCTGAGTGAACAGTTTACAAACTCAGAAATCGCAAAGTTTAGCGAGTTTACTGCTGAAGCATTAAAACGAACACGGGTCCGTGAATATCCTCCTTCTCGAGAAGAGATTATTACTCTTTTgggaagaagaaaaataaacacaacAGTTTATTGCTATGGTGGAGGGTCTTGCCAAATTTCTATTGATTCATCAACAACAAGTGGTGAAGTAGTAAAGATATTATGCAAAGGAATGAGAATTGTTCAAGACAACCTAATATTTggattatttgaaaaatgtggtCCACACAATGAAAGATCTATTGAGGACAGACAGATAATTGCTGACATATTATccaaatttgaaaaATACAAAGCATTAGAAGCGAACAAAAATAGTCGCAACAAATGGCAACTgtttttcaagatattttgtttcttacaTCCGCAACGAGTTAAACCCAATTCACCAGAGGGACTGTTTCTCTATGAACAGACTTGTGAACACATCATGCGTGGAAGGTATCTGTTGCCAGAGCTAACTTTATGCAAACTGGCTGCGCTGCGGTTGCAATATATCGAAGGAGATTGCTCCGTTGGAACTTGGATAGATAAAGAAATCAGTACAATATTCCCTGTTGCTAAAATCCGATCAAAAGCAGCTCAAGAAAAGAAACCTGCACCAAAAAAAGAGCACGGAACGATACGCGGAACGCTACTCAAAGCAATGCTAACATTCAAAGgTGAAGAAGAAATCGAAGAAGGTTCAGAGCAACCTACTTACGATGTCGAGGAAGAACTTTCTGCAATAAAAAGCAGTATTATGGGCAAATGGAAAGAACTCAAGGGAACTGATCCTGACGACGCCCAAGCTGAGTATATGTCAATAGTGAAGAACTGCTACGGATTTGGATCAACTATGTTTTATGTCAAGTCAAAAGATTCTTCCTTTCCTCCGAATCTTTTGCTTGGAGTCAGTTATAAGAACGTAGCTTTGTATAAACGCGACGAAACGCGACCGATACAAACATTCAATTATGAAAAcattttgtCTTTTGGGGCACCTTACCCTAATATTTACCGTATTATCATAGAAGGTAGAAGTCCAATACAATTTGAAACTGAGAAGGTCGTGGAGATTGCAAAACTTATGAAAGCTTACATCAATGAAATCGTCAAAAAAGCTCGTCGCAACAGCGAGGTGTTCAAAAACACGTTACACCTTAtcgaaaattaa

Transcript

BRAKERKRET00000018577

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZJP6	Unconventional myosin-X OS=Rattus norvegicus OX=10116 GN=Myo10 PE=1 SV=1
F8VQB6	Unconventional myosin-X OS=Mus musculus OX=10090 GN=Myo10 PE=1 SV=1
Q9HD67	Unconventional myosin-X OS=Homo sapiens OX=9606 GN=MYO10 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR051724 all species →	Family	Actin-based Motor Myosin	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46049 all species →	AGAP003327-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12559	MYO10; myosin X	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000018577.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

9TPM > 0

7Conditions

1.4Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	1	0.02	0.38
Whole	6	5	0.82	1.40
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	0.05	0.05
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	0.66	0.66
symbioic hydra M9 strain · symbioic hydra rep1	1	1	0.69	0.69
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.38
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	1.40
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	1.10
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	1.06
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.94
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.43
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.05
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.66
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.69
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.