Gene detail

Detailed information of BRAKERKREP00000018645.1 in Hydra viridissima

Genomic Location: QPEY01000147.1:267301...271075
NR annotation: XP_047143680.1, nuclear distribution protein nudE-like 1 isoform X2 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKH4	Nuclear distribution protein nudE-like 1 OS=Gallus gallus OX=9031 GN=NDEL1 PE=2 SV=1
Q28CJ6	Nuclear distribution protein nudE-like 1 OS=Xenopus tropicalis OX=8364 GN=ndel1 PE=2 SV=1
Q9ERR1	Nuclear distribution protein nudE-like 1 OS=Mus musculus OX=10090 GN=Ndel1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007770 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04880 all species →	NUDE_C	NUDE protein, C-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006964 all species →	Domain	NUDE domain	Interproscan
IPR033494 all species →	Family	NUDE family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10921 all species →	NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0007100 all species →	Biological Process	mitotic centrosome separation	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0047496 all species →	Biological Process	vesicle transport along microtubule	Interproscan
GO:0051303 all species →	Biological Process	establishment of chromosome localization	Interproscan
GO:0051642 all species →	Biological Process	centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000018645.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000018645.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

8TPM > 0

7Conditions

2.0Max TPM

0.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	0	0.00	0.00
Whole	6	5	0.76	1.37
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	2.02	2.02
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	0.73	0.73
symbioic hydra M9 strain · symbioic hydra rep1	1	1	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	1.37
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.96
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.94
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.75
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.52
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	2.02
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.73
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.