Gene detail

Detailed information of BRAKERKREP00000018779.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_047128069.1, phosphatidylinositol-binding clathrin assembly protein LAP [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O55012	Phosphatidylinositol-binding clathrin assembly protein OS=Rattus norvegicus OX=10116 GN=Picalm PE=1 SV=1
Q13492	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens OX=9606 GN=PICALM PE=1 SV=2
Q7M6Y3	Phosphatidylinositol-binding clathrin assembly protein OS=Mus musculus OX=10090 GN=Picalm PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004236 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07651 all species →	ANTH	ANTH domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014712 all species →	Homologous_superfamily	ANTH domain superfamily	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR045192 all species →	Family	Clathrin coat assembly protein AP180-like	Interproscan
IPR013809 all species →	Domain	ENTH domain	Interproscan
IPR011417 all species →	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22951 all species →	CLATHRIN ASSEMBLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005545 all species →	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005905 all species →	Cellular Component	clathrin-coated pit	Interproscan
GO:0006900 all species →	Biological Process	vesicle budding from membrane	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0016185 all species →	Biological Process	synaptic vesicle budding from presynaptic endocytic zone membrane	Interproscan
GO:0032050 all species →	Molecular Function	clathrin heavy chain binding	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0098894 all species →	Cellular Component	extrinsic component of presynaptic endocytic zone membrane	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20044	PICALM; phosphatidylinositol-binding clathrin assembly protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000018779.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

11TPM > 0

7Conditions

12.8Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	2	0.61	8.28
Whole	6	6	11.33	12.81
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	10.49	10.49
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	7.15	7.15
symbioic hydra M9 strain · symbioic hydra rep1	1	1	3.03	3.03
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	8.28
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	2.66
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	12.81
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	12.77
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	11.12
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	10.62
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	10.45
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	10.17
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	10.49
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	7.15
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	3.03
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.