Gene detail

Detailed information of BRAKERKREP00000019930.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012556107.2, peroxisome biogenesis factor 2 [Hydra vulgaris]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000019930

atgaatagCAACCATTACAAACCATTGCGTGTTACACAGCTGGATGCAGACTCTTTAACTAATCAAGCTTtccatattttcaaaaaggaaaTTAAAGGTTCCCTTTTAAATGAACCATTCACCAAGTTTCTCCATTTAGAACAGGAAATAGATGTTTTCTTACTGTTTATTCTCTGGAAGTATTCAGTCAAAAAATCTGATTCCACTATTGGACAATtgtatttcaaaatgaaatacatTTCACCTGGTGGTTTATCAGATCGGCAGAAGCTATGGTATTTTCTTCTCAATGCAGCAAGATACTGGGTTTCTAGCAGACAGTTTGAAATTCTTCAAGTGCTTGAAAAATTACTTGCTTTATCTGAAAGGAATCAAGTTCTAATAAGAATTATCTTTTCAAACATTGGAAAAATAGTAGAGCTGGTTGAGTTTATCAactatgttttatttattaaaaatggagAGTATCTAAATGTAATAGATCGATTTTTTAACTGGAAGGTAATAATGCCAGATAAACCATCTCCGCGATATATTGATTATGCCTATATGCGCAAAGAGTTGATATGGTCCAAAATCacagaaacagttttttgctTGTTGCCATTTATCAACTTCCCAAAACTTTATAATCTGTTGTGTTTGATTAGCAGACATTTTGGTTTTACACGTTCTTTGaaagaaggttttttaaaaattaactgtaATGTTTGTGGAGAAAAAGCAACTAATCCTCAAGTGAGCAACTGCGGTCATCTGTTTTGTTGGTACTGTGTCAAAGGAAATATTTTGGCTGATGGTTCTTACAGATGTCCAGCTTGTGGCGAAAGTATTTTGTCTATTAATCCACTTGAGTATATGAATACTGTTGTTATGACAACAAATATCTTTTGTAATGCATCGTTGTGTgatcattattatttaaaagtttcttttcgGTGCGAAATTGAGgttgttGCATTTTCAAACTACCAAGTAATAAGTGGCTTCAGACCATATGTTGTAATTGTTGAAGACCAAACTGACAGCAAGCTTGAGCACCATTTGGATGCTGTGTTAACTGAAGGACCTGGATGTAACTTCTCAAGTGAATCAACTCAAAATCAtttttgggATAGTTCTGATGTTTTGGAAAGCAAATGTGTTGAGCTGCAGAGTGACAGTGAAGCAGTTTGTGGTGTATTTTGGTTAGTACAGATTCCTCTTTCAATAAAAACGTCatctatttttgtaaaagctttttcaaatgGCTTTGGGAATCATGTTCCCACAAAAAGttttgatggtggaaatacttttttgaaaataaagtatgAAGGACCAACAATCACTTCTTTCTTATCAGATCAGTTTGACCATTTTGTTGTGGTTGCAAGTGATATGATGATGTGGTATGGTATGCCAGAATACAATCATGTTTTGCAATTGCCGTTCAGTATTATTGTTGgcgatgtttttttatttgattcttCCAATACTTTAACAAAGatatcttaTCAAAATGtcggaaaaaaaagttgtcttttGCGAACTGAGCTTTCAATACAAAGTTTGTTGTATGAAGTTTCATTTATTCCAAAGTTAAATGAAGCAGAGAACCAGTTTTTGAACAAGTGCTCCTATTTATCTAACTGTGAGTTGCCTAACGAGATAAACTCTCAGATGCCAGATTTATTTCcaattacattaaaatgtCAGCTAACTTCCTTGATAATTTACGCTGAtcaaatagaatatttttctaGAGTTGAACGCATTTTTCATTCTGTTCATACTCCCTTTGTTAGTATGAAAGATTTCTCCAAATGTCAAACACAAGACAATTCTCTATTGAAAGAAACTTTTCTAGATTATCTAACTTCAGAGTATCCAGATTTAATCTTTCTTGGAATGGAAGACTGTTTTACATTTTCCATTGAAGTTTCATTGAATATAGAAAACTTGTTCTCTGATGAGTTTGATTTGACTGATGTTGAGTTGAGTCATAAATTGATAGACACATCAGTGTTATTTGTGAATATATCCAAAAGTATTGATTGGTTTGAAAGGATTGTTTTGTTTAAGgtttttttgtgTGACGCAGGTGTTCTGAGATTGCAGGGTTATCCAGtAGTTAACCTTTTGCCAATTGTTTTCCTAATGCATAGCATTTTATCTATTGCATTTGGCTCAGCTACTTTGAGTAATGGGAAGTGTCTACCGGTAAGACAAAATATTGTATCATCTGGTATTTGGTTGTTTGGTATTGCTGGATTGATTATTCTTAAACCTGAAATGGTGTCATGCAAGAAATctaagaatgttaaaaattttcaagtttcatGTTGGAAAGCTTTATGTACATTCAGTATCACCTGTGAAATCTTCTTGTACCACTtataa

Transcript

BRAKERKRET00000019930

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7F4V8	Peroxisome biogenesis factor 2 OS=Danio rerio OX=7955 GN=pex2 PE=3 SV=1
Q9CA86	Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana OX=3702 GN=PEX2 PE=1 SV=1
Q75JQ3	Peroxisome biogenesis factor 2 OS=Dictyostelium discoideum OX=44689 GN=pex2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006642 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF04757 all species →	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR025654 all species →	Family	Peroxisome biogenesis factor 2/10	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR045859 all species →	Domain	Peroxisome biogenesis factor 2, HC subclass-RING finger domain	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR006845 all species →	Domain	Pex, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48178 all species →	PEROXISOME BIOGENESIS FACTOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000019930.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.