Gene detail

Detailed information of BRAKERKREP00000019955.1 in Hydra viridissima

Genomic Location: :...
NR annotation: XP_047134100.1, histone-lysine N-methyltransferase SETDB1 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000019955

atGgaaaatcaaCAGGGTGAGTATATTTgtcaaaagaaagaaaatgatcCAAAAGAAGCAAATCCATTAAAATTGAAGCtgattaacataaattttttaaagcgtTCGAATTCAGCTCTGAGTTCCAGTTCTGATTCTAGTAAAAATTCACACATTGAAATTAAACATTCTTTGAAGAAACGCAGAGTTATTTCTGATACAGAAGAAAGTTCACcagAGAGGAATACAAAGAATGCTACGTTGAATCAAGAAACTTTTAGTGTTTCTTCTGTTGTTGAAATGAGTCCTCTAGAATCGACATGCTCTATAAGCACTTCATCTTCTATTGGTAATGGAATGTCTCCTTCAACACCACTTGAACCTTCAGTTATTAGTTCTTCAGATGATATCTCAAAGAAAAGTGTCATGTCATCTAACTCTGTATTGTCAAACAAACAAGAAGATGATTTAAAATCCTCTCTTCATATACATTATGtTCCACACACATGCAGCTGCGCCTGTATAAAAGACTCAAGAAACTATTTTGATCAGCATCGTTTGGGAATATACAACTATTTATCTATACCTTTTCAGCTCGGATGGAAAAGGGAGAGTTCCAAAAAGAAGGTGAATTATCACAGAGATATTTACTATAGAGCTCCATGTGGTAAAAGGATGagaaaCCTGAGTGAAGTAACAAAGTatttaacgcAGActgaatgtaaaaatgtttgtattgACATGTTCTGTTTTCAATCGAATGTTTCATGTCGAAACCACAcctcaaaaacaaaaccagCACTTTATCGAAATGAAGACATATCaaatggaaaagaaatttGCCCTGTTGTTTGCGTCAATGAGATCTCAACTGAACCTCCTCCGCATGTTACTTACATTAACTATCGAATAAAAGCTGATGATGTCTCAATAAATACTGACCCTGGGTTTTTAGTCTGTTGTGATTGTACAGACAATTGTCAAgatAAAGCCACTTGCCAATGTGCAAAGTTGACGATTGAGAGCAGCAATGCAATCGATGgagaaattgataaaaattcaggATACCACTTCAGAAGATTAAAAGAATGCATTGCAACAGGcaTTTATGAGTGTAATCAAAATTGTGCATGTTCTCCAGTAACATGCTATAATCGTGTTGTACAAAATGGAATCCAACTTCGTTTGCAAGTATTCCTTACAGAAAATCGTGGCTGGGGTTTAAGATGTGTAGATGACATACCTAAAGGGACTTTTGTTTGCACATATGCTGGCCAAGTTTTAAATGAGCAAACAGCTAATAAAGAAGgaattGACTTTGGCGATGAGTATTTAGCAGAGCTTGATCACATTGAAGTTGTAGAACAAGCCAAAGAAGGTTATGAGTCAGATGTTCCTGAGCTGAGCAACCATTCCATAGATGACATGAgCAGTGAAGAATGGCAAAGTGATAGCAGTTACTCTGTAGTTTTGATCTCGTCAGACAGCACTGATAGTTCTGATAATGATGATCCTGCTGTTAAAAGCaaggacAAATGTGAAAATCCTGTCAAAAAAGAGCAACAAGTTACTTGTGTAgaaacaaaaagtgaaaatacaGAAACAAGCAAAGTAACCGAAATTCGGCATGTAGCGAAGAAGTCAACTGGGGCAAAAGTTCATTCTTACATGAGTCATAGGGGAAAATTCTTTATGACTCAAAGACTTGATGCAGCTGCAAGCAACAAGACAAGTAAATCTTCTAATCACTTGTCGACCAGAtatctttatcaaaatgataatcAAATGTTTATACTTGATGCAAAGTCATATGGTAACGTTGGTCGTTACATGAATCACAGTTGCAACCCCAACCTTTTTGTTCAAAACGTTATGGTTGACACTCACGATCTTCGCTTTCCTTGGGTGGCATTTTTTACACAACAcaACATTACTGCATATACTGAATTAACGTGGGATTACAATTACGAGGTCGGCAGTGTTCCtaacaaacaaatttcttGCAAATGTGGTTCTAAACAGTGTAAAGGGAGACTTCTCTGA

Transcript

BRAKERKRET00000019955

Protein

Uniprot

Uniprot term	Description
Q08BR4	Histone-lysine N-methyltransferase SETDB1-B OS=Danio rerio OX=7955 GN=setdb1b PE=2 SV=2
Q1L8U8	Histone-lysine N-methyltransferase SETDB1-A OS=Danio rerio OX=7955 GN=setdb1a PE=3 SV=1
O88974	Histone-lysine N-methyltransferase SETDB1 OS=Mus musculus OX=10090 GN=Setdb1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01429	MBD	Methyl-CpG binding domain	Domain	Interproscan
PF00856	SET	SET domain	Family	Interproscan
PF05033	Pre-SET	Pre-SET motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007728	Domain	Pre-SET domain	Interproscan
IPR001739	Domain	Methyl-CpG DNA binding	Interproscan
IPR001214	Domain	SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR016177	Homologous_superfamily	DNA-binding domain superfamily	Interproscan
IPR003616	Domain	Post-SET domain	Interproscan
IPR051516	Family	Histone-lysine N-methyltransferase SETDB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46024	HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0042054	Molecular Function	histone methyltransferase activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0046974	Molecular Function	histone H3K9 methyltransferase activity	Interproscan
GO:0051567	Biological Process	obsolete histone H3-K9 methylation	Interproscan
GO:0070828	Biological Process	heterochromatin organization	Interproscan
GO:0090309	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan