Gene detail

Detailed information of BRAKERKREP00000020116.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: XP_012559008.1, tuftelin-interacting protein 11 isoform X1 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000020116

ATGGCCTCAGATGAAgagtttgaaagttttgaaataacaGATTTTGATTTGGAAAGTGAGCTTTACCCTGGTCAACATAAAAAACAGACAAAGGAACAGGCTATATATGGTGTATGGGCAAATTctgatgatgaaaatgatggTCATATGCAAAGaaagtcaagaaaaaaatccgGGATATCTGAATATGTTGATCCGATGGGATTTGTCAGTGGTGgattatttaatgataaagaaaGCGgcTTCAAAAGCAAATCAGTCATAAACACCAAaAATTTCGGAGCCTGGGAAAAATACACCACAGGGTTTGGCAGTAAAATGCTTGAGAAGatggGTTATGAAGGTAAAGGTCTTGGAAAACGTGGAGAGGGCATAATTGAGCCTATTGAGGCATATAAAAGGGGTGGAAGAGCTGCAGTTGGTGCTTATGGttctgaaactaaaaaatcaaaagagCCTGTTTATGACAGcgatgaaaatgaagaaattgaaattaaagcTGAAATTGAGAAATTACATCAATGGAAGAAGACTGGACAGGAGACAGCTAAGCCAAAGTATGTTTACAAAACAGCTGAGGAAGTAAAGaagagtAGTGCTACACAAAAATTGGCACCATTGCTTTCCTATGGAAACAATAtcaaaGTTGTTGATATGACTGGACcagaaacaaaagttttacaagGTTATAACTCAATTGGGCATCAACATGCAAAACCCGGTGATGGTGAGAAAAAAGGTATTGTTGGAGATGATTATAAAGCCTTTGATATTCCTGAACTCCTGTACAATTTAAACTTGTTGGTTGATCTTGCTGAATCTGAAATCATTCAAATTGACAGACAgctTCGTTTTGAGAAAGACAATGTCGTGAACTTGACATATGAAAAGGAGCGCTTAGATAAGGTTGTACAAAATGAGgatatagaaataaataatctgGAACATGTTCTTAGAATCATTGACAGgTGCAAGGCAGGTCTGCAACCTGATAAGGATGAACCTTTATCTGTAGAAGGTTTGGTTCATTGTTTTCAAACACTTCAAGATAATTTTTACGAAGAATACAAGttataCAACTTGGATAAATTAGTTGTTCCATTGGGTTTTCCACTACTAGCTCGTCATTTTAGCTCCTGGCAGCCATTTTGTGAGCCAACGCATGGTATTGAATATGTAAAACTGTGGAAAAATGTTCTTGAGTctgagcaaaaaaatatagagtttgaaaaaacaaaagaaaatcggagCATGGGTCCATTTGAAAGAATTATCTGGGAGATATGGATGCCTCATATTCGTACTGCTATTGGaatTTGGCAAGCCAAAAACCCTGATCCTTTAATTTCTGTATTGGAAGCATGGGTACAACTCATTCCTGATTGGGTAGTTGCTAACATTCTAGATCAATTAGTCATGCCAAAGTTGCAAgCAGCAGTTGAGTTCTGGAATCCTTTGACTGACCATGTTCCAATACATTCTTGGATACATCCATGGCTTCCCCTAATGGGTGAGCGTCTTGAACCCTTGTATGCACCTATACGCCATAAACTAGCCACAGCACTTACAAATTGGCATCCATCAGATCCATCTGCTAAAGTTATCCTAGAACCTTGGGTTAAGGTATTTTCTCGAGGCACTATGGAAGCTTTTCTGATTAGAAGTATTTACCCAAAACTTGATCAGTGTATGAGTGAGTTTAAAATCAACCCTCATCAACAGAttttagAACCCTTTCACTGGGTTATGGCATGGAAAGATATTATCAGTGTCCACCATATGGTGAGCATACTAGACAAACATCTTTTTCCCAAACTACTGCAGGTTTTACGAAAGTGGCTCCTTAATTCTCCTAACTATGATGAAGTTACGAAATggtACCTGGGATGGAAATCCATGTTTGGTGCCGAGTACACTTCGAACCCGACTATTAAAGAACAATTTAATCGAGCCTTGACATTAATGAATCAAGCTGTTAGTGGAACTATGCAACCTGGCGCGAAGGAAAATGTTGCTTATTTAACAAGCACCGAAAGGAGGCGCGAAGCAGAACAGGCCTTTCTTTccgaaaaagtaaattatatatttttgtatttttga

Transcript

BRAKERKRET00000020116

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBB9	Tuftelin-interacting protein 11 OS=Homo sapiens OX=9606 GN=TFIP11 PE=1 SV=1
A1XD94	Tuftelin-interacting protein 11 OS=Macaca mulatta OX=9544 GN=TFIP11 PE=2 SV=1
A1XD93	Tuftelin-interacting protein 11 OS=Pan troglodytes OX=9598 GN=TFIP11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004065 (this species only)
Transcription factor family	GCFC · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07842 all species →	GCFC	GC-rich sequence DNA-binding factor-like protein	Family	Interproscan
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF12457 all species →	TIP_N	Tuftelin interacting protein N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR022783 all species →	Domain	GCF, C-terminal	Interproscan
IPR045211 all species →	Family	TFP11/STIP/Ntr1	Interproscan
IPR022159 all species →	Domain	Tuftelin interacting protein, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23329 all species →	TUFTELIN-INTERACTING PROTEIN 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000390 all species →	Biological Process	spliceosomal complex disassembly	Interproscan
GO:0071008 all species →	Cellular Component	U2-type post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13103	TFIP11; tuftelin-interacting protein 11	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000020116.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

5TPM > 0

7Conditions

14.1Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	3	0.93	14.10
Whole	6	1	0.02	0.15
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	1	1.93	1.93
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	14.10
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	2.12
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.51
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.15
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	1.93
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.