Detailed information of BRAKERKREP00000020679.1 in Hydra viridissima

Genomic Location: QPEY01000216.1:103941...109500
NR annotation: XP_047143098.1, chitin deacetylase 8-like [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
H9JW44Chitin deacetylase 7 OS=Bombyx mori OX=7091 GN=CDA7 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001367 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01522
all species →		Polysacc_deac_1Polysaccharide deacetylaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002509
all species →		DomainNodB homology domainInterproscan
IPR011330
all species →		Homologous_superfamilyGlycoside hydrolase/deacetylase, beta/alpha-barrelInterproscan
IPR052740
all species →		FamilyCarbohydrate Esterase 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45985
all species →		-Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan
GO:0016810
all species →		Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bondsInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09654B3GALNT2; beta-1,3-N-acetylgalactosaminyltransferase 2EC:2.4.1.313
Glycosyltransferasesko01003deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000020679.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole body 18 0 0.00 0.00
Whole 6 0 0.00 0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1 1 0 0.00 0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2 1 0 0.00 0.00
symbioic hydra M9 strain · symbioic hydra rep1 1 0 0.00 0.00
symbioic hydra M9 strain · symbioic hydra rep2 1 0 0.00 0.00
unannotated 1 0 0.00 0.00

Per sample · hover a bar for the full sample record

Show the sample table (29 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR21134050 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134051 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134052 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134053 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134054 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134055 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134056 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134057 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134058 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134059 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134060 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134061 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134062 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134063 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134064 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134065 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134066 whole body whole body not recorded not recorded SRP392977 0.00
SRR21134067 whole body whole body not recorded not recorded SRP392977 0.00
SRR10058802 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058803 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058804 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058805 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058806 Whole Whole not recorded not recorded SRP220397 0.00
SRR10058807 Whole Whole not recorded not recorded SRP220397 0.00
DRR048593 aposymbioic hydra M9 strain · aposymbioic hydra rep1 not recorded not recorded aposymbioic hydra rep1 DRP003902 0.00
DRR048594 aposymbioic hydra M9 strain · aposymbioic hydra rep2 not recorded not recorded aposymbioic hydra rep2 DRP003902 0.00
DRR048595 symbioic hydra M9 strain · symbioic hydra rep1 not recorded not recorded symbioic hydra rep1 DRP003902 0.00
DRR048596 symbioic hydra M9 strain · symbioic hydra rep2 not recorded not recorded symbioic hydra rep2 DRP003902 0.00
ERR13389755 unannotated not recorded not recorded not recorded ERP162636 0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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