Gene detail

Detailed information of BRAKERKREP00000020967.1 in Hydra viridissima

Genomic Location: QPEY01000231.1:77350...86366
NR annotation: XP_047131772.1, uncharacterized protein LOC105846183 [Hydra vulgaris]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P4U6	E3 ubiquitin-protein ligase znrf1 OS=Danio rerio OX=7955 GN=znrf1 PE=2 SV=1
Q66KG7	E3 ubiquitin-protein ligase ZNRF1 OS=Xenopus laevis OX=8355 GN=znrf1 PE=2 SV=1
F1MM41	E3 ubiquitin-protein ligase ZNRF1 OS=Bos taurus OX=9913 GN=ZNRF1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007331 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR051878 all species →	Family	ZNRF ubiquitin-protein ligase	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46661 all species →	E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070936 all species →	Biological Process	protein K48-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000020967.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000020967.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

22TPM > 0

7Conditions

329.0Max TPM

135.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	12	108.06	329.03
Whole	6	6	238.39	312.59
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	149.35	149.35
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	138.55	138.55
symbioic hydra M9 strain · symbioic hydra rep1	1	1	118.59	118.59
symbioic hydra M9 strain · symbioic hydra rep2	1	1	137.59	137.59
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	329.03
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	302.23
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	263.60
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	254.08
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	214.52
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	196.94
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	139.33
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	106.11
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	104.57
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	20.37
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	9.45
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	4.90
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	312.59
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	302.61
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	243.13
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	223.53
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	191.19
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	157.31
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	149.35
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	138.55
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	118.59
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	137.59
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.