Gene detail

Detailed information of BRAKERKREP00000022473.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_129241914.1, signal peptidase I [Achromobacter veterisilvae]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7WD32	Ribonuclease 3 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=rnc PE=3 SV=1
Q7W5J6	Ribonuclease 3 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=rnc PE=3 SV=1
Q7VW39	Ribonuclease 3 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=rnc PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10502 all species →	Peptidase_S26	Signal peptidase, peptidase S26	Domain	Interproscan
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR000223 all species →	Family	Peptidase S26A, signal peptidase I	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR036286 all species →	Homologous_superfamily	LexA/Signal peptidase-like superfamily	Interproscan
IPR019533 all species →	Domain	Peptidase S26	Interproscan
IPR011907 all species →	Family	Ribonuclease III	Interproscan
IPR019757 all species →	Active_site	Peptidase S26A, signal peptidase I, lysine active site	Interproscan
IPR019756 all species →	Active_site	Peptidase S26A, signal peptidase I, serine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43390 all species →	SIGNAL PEPTIDASE I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000022473.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.