Genomic Location: QPEY01000524.1:291440...293718
NR annotation: CAB3834434.1, Beta-barrel assembly-enhancing protease [Achromobacter denitrificans]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000022607 |
| Transcript |
| BRAKERKRET00000022607 |
| Protein |
| BRAKERKREP00000022607.1 |
| UniProt accession | Description |
|---|---|
| A9I6X6 | Outer-membrane lipoprotein LolB OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=lolB PE=3 SV=1 |
| Q7WNY6 | Outer-membrane lipoprotein LolB OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=lolB PE=3 SV=1 |
| Q7W183 | Outer-membrane lipoprotein LolB OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=lolB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0033429 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14559 all species → | TPR_19 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF03550 all species → | LolB | Outer membrane lipoprotein LolB | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004565 all species → | Family | Outer membrane lipoprotein LolB | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR051012 all species → | Family | Cellulose Synthase/LPS Assembly/PSI Assembly | Interproscan |
| IPR029046 all species → | Homologous_superfamily | Lipoprotein localisation LolA/LolB/LppX | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45586 all species → | TPR REPEAT-CONTAINING PROTEIN PA4667 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009279 all species → | Cellular Component | cell outer membrane | Interproscan |
| GO:0015031 all species → | Biological Process | protein transport | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
BRAKERKREP00000022607.1.Transcript abundance of BRAKERKREP00000022607.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
