Gene detail

Detailed information of BRAKERKREP00000022649.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_175131496.1, 3',5'-nucleoside bisphosphate phosphatase [Achromobacter pulmonis]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7NXD4	3',5'-nucleoside bisphosphate phosphatase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK) OX=243365 GN=CV_1693 PE=1 SV=1
Q9K0C5	Transcription elongation factor GreB OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=greB PE=3 SV=1
Q9JVD0	Transcription elongation factor GreB OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=greB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01272 all species →	GreA_GreB	Transcription elongation factor, GreA/GreB, C-term	Domain	Interproscan
PF03449 all species →	GreA_GreB_N	Transcription elongation factor, N-terminal	Domain	Interproscan
PF02811 all species →	PHP	PHP domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001437 all species →	Domain	Transcription elongation factor, GreA/GreB, C-terminal	Interproscan
IPR036953 all species →	Homologous_superfamily	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Interproscan
IPR003141 all species →	Domain	Polymerase/histidinol phosphatase, N-terminal	Interproscan
IPR036805 all species →	Homologous_superfamily	Transcription elongation factor, GreA/GreB, N-terminal domain superfamily	Interproscan
IPR022691 all species →	Domain	Transcription elongation factor, GreA/GreB, N-terminal	Interproscan
IPR018151 all species →	Conserved_site	Transcription elongation factor, GreA/GreB, conserved site	Interproscan
IPR006358 all species →	Family	Transcription elongation factor GreB	Interproscan
IPR004013 all species →	Domain	PHP domain	Interproscan
IPR028624 all species →	Family	Transcription elongation factor GreA/GreB	Interproscan
IPR016195 all species →	Homologous_superfamily	Polymerase/histidinol phosphatase-like	Interproscan
IPR052018 all species →	Family	PHP domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42924 all species →	EXONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan
GO:0004534 all species →	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000022649.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.