Gene detail

Detailed information of BRAKERKREP00000022666.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_103272154.1, MULTISPECIES: F0F1 ATP synthase subunit A [unclassified Achromobacter]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9HY34	ATP synthase subunit a OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=atpB PE=3 SV=1
Q2KU30	ATP synthase subunit a OS=Bordetella avium (strain 197N) OX=360910 GN=atpB PE=3 SV=1
Q7WEM3	ATP synthase subunit a OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=atpB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0030467 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00119 all species →	ATP-synt_A	ATP synthase A chain	Domain	Interproscan
PF00430 all species →	ATP-synt_B	ATP synthase B/B' CF(0)	Coiled-coil	Interproscan
PF00137 all species →	ATP-synt_C	ATP synthase subunit C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000568 all species →	Family	ATP synthase, F0 complex, subunit A	Interproscan
IPR005864 all species →	Family	ATP synthase, F0 complex, subunit b, bacterial	Interproscan
IPR045082 all species →	Family	ATP synthase, F0 complex, subunit A, bacterial/chloroplast	Interproscan
IPR035921 all species →	Homologous_superfamily	F/V-ATP synthase subunit C superfamily	Interproscan
IPR023011 all species →	Active_site	ATP synthase, F0 complex, subunit A, active site	Interproscan
IPR002146 all species →	Family	ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast	Interproscan
IPR035908 all species →	Homologous_superfamily	ATP synthase, F0 complex, subunit A superfamily	Interproscan
IPR000454 all species →	Family	ATP synthase, F0 complex, subunit C	Interproscan
IPR005953 all species →	Family	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	Interproscan
IPR002379 all species →	Domain	V-ATPase proteolipid subunit C-like domain	Interproscan
IPR028987 all species →	Homologous_superfamily	F-type ATP synthase subunit B-like, membrane domain superfamily	Interproscan
IPR020537 all species →	Binding_site	ATP synthase, F0 complex, subunit C, DCCD-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42823 all species →	ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0045263 all species →	Cellular Component	proton-transporting ATP synthase complex, coupling factor F(o)	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0042777 all species →	Biological Process	proton motive force-driven plasma membrane ATP synthesis	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan
GO:0033177 all species →	Cellular Component	proton-transporting two-sector ATPase complex, proton-transporting domain	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000022666.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000022666.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.