Gene detail

Detailed information of BRAKERKREP00000022744.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_026637867.1, phosphoenolpyruvate synthase [Bordetella petrii]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000022744

ATGTCGTATGTCGTTTCATTCGAGAAGCTCCGTATGACGGATGTGGACTCGGTAGGAGGCAAGAACGCGTCTTTAGGTGAAATGATTAGCCAGTTGTCTGGCGCCGGCGTCCGTGTGCCCGGCGGGTTTGCGACGACCGCTCAGGCGTTTCGTGATTTTCTGCAAAAATCTGGCTTGGATAAGCGCATTGAGCAACGTTTGCGCCACCTTAATCCCGAAGACGTGCGCGAATTATCAGCCGCTGGGGCTGAAATCCGTCAGTGGGTAATTGAAGCACCATTTTTGGCCGAATTCGAGCGACAAATCCGGGCGGCGTTTGCCGAGCTTGATGCCGATGGCAAAGGCTCATTTGCCGTGCGTTCCTCGGCTACGGCTGAAGATTTGCCCGACGCTTCCTTCGCCGGCCAGCAGGAAACTTTTCTGAATGTCGTAGGCATCAACGACGTGCTCGACAAAATACGCCACGTATTTGCTTCTCTCTACAACGACCGAGCCATTTCCTATCGCGTTCACAAGGGCTATGCCCACGCCGAGGTGGCGCTGTCGGCAGGTGTGCAACGCATGGTCCGTTCAGACAAGGGCAGCGCGGGCGTGATGTTTACTATTGACACCGAATCAGGCTTTAAGGATGTGGTGTTTATCACCTCTTCATATGGCCTGGGCGAGACGGTGGTGCAGGGGGCGGTCAATCCTGACGAGTTTTATGTGTTTAAGCCTACGCTTGAGCAGGGATACTATCCCATTGTGAGCCGTCGCATCGGCTCTAAGCTTATCAAAATGGAATTTGACCCGCAGCGGCGAGACGGACGCGCCGTGTGTACGGTGGACGTGCCGGTGTCGGAGCGTAATCGCTATTCGCTTACCGATGATGAAGTGATCGAGCTAGCGCGTTACGCGATCATTATTGAAAAGCACTATAAGCGCTCGATGGATATTGAGTGGGGACGCGATGGTGTGGATGGCAAAATCTATATTCTGCAGGCGCGCCCCGAGACGGTAAAGTCGCAGCAGGGCGCCAACGACGTGCAACAGCGCTATCGCCTAAAGGCCTCTGGCCAGGTTCTGGTGACGGGCCGCGCTATCGGTCAAAAAATTGGTTCCGGACCGGTGCGCATTGTGGCCGACGTGTCCGAGATGGAGAAGGTACAAGCAGGCGACATCCTGGTTACCGACATGACAGATCCCAATTGGGAACCTGTCATGAAACGTGCCTCGGCCATTGTGACCAACCGCGGTGGCCGCACCTGCCATGCGGCCATCATCGCCCGCGAGTTGGGTATTCCGGCAGTGGTGGGCTGCGGCAATGCCACTGACCTACTTAAAGAAGAGCAGGCGGTGACGGTTTCATGTGCCGAGGGCGATGAGGGCCGTATCTATGATGGCCTTATTGAAACTGAGGTTGAAGCAATTCGTCGCGGCGAAATGCCGGCTATTGACGTCAAGATCATGATGAACGTGGGCAACCCACAGTTGGCGTTTGACTTTGCGCAGATCCCGAATCAGGGTGTGGGCCTTGCTCGCCTagaatttattatcaataacaACATCGGCATTCATCCCAAAGCCGTTCTTGACTATCCCAATGTCGATCGTGAGCTTAAAAAGGCGGTGGAATCAGCCGCCCGCGGCCATGCCAGTCCGCGTGCGTTCTTCGTGGAAAAGCTAGCTGACGGAGTGGCGACCATTGCCGCCGCGTTCTGGCCTAAACCGACGATTGTGCGTCTGTCGGATTTTAAGTCTAATGAATATCGCAAACTGGTGGGCGGTTCGCGTTATGAGCCCGAAGAAGAAAATCCCATGCTGGGTTTTCGTGGCGCCTCGCGTTATATCGCGGCCACTTTTGACGATTGCTTCCGCATGGAATGCGAAGCACTGAAAAAAGTGCGCGACGAAATGGGTTTAACCAATGTAGAAATTATGGTTCCGTTCGTGCGGACGGTAAAACAGGCCGAACAAGTGGTGAATTTGCTCGCCAAGCACGGCCTGGCGCGTGGCAAAAATGGGTTGAGACTCATCATGATGTGCGAAGTGCCCTCCAACGCTATTTTGGCTGAAGAGTTTTTGCACTATTTCGACGGTTTTTCTATCGGTTCAAACGACATGACCCAACTTACCTTAGGTCTAGATCGCGATTCAGGTATGGAACTGCTTGCTGCTGATTTCGACGAACGCGACCAAGCCGTAAAGTTCATGCTGCGCCGGGCCATTAAGGCATGCTTGGCCGCTAATAAATATATAGGCATCTGTGGTCAAGGTCCCAGTGATCATCCGGATTTTGCTGCATGGCTTAAGGATGAGGGCATTGTCTCCATGTCGCTCAATCCAGACACAGTGGTTGATACCTGGCAGCGCTTGGCGAGCTGA

Transcript

BRAKERKRET00000022744

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9K0I2	Phosphoenolpyruvate synthase OS=Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58) OX=122586 GN=ppsA PE=1 SV=1
Q02KR1	Phosphoenolpyruvate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=ppsA PE=1 SV=1
P23538	Phosphoenolpyruvate synthase OS=Escherichia coli (strain K12) OX=83333 GN=ppsA PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0020935 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01326 all species →	PPDK_N	Pyruvate phosphate dikinase, AMP/ATP-binding domain	Family	Interproscan
PF00391 all species →	PEP-utilizers	PEP-utilising enzyme, mobile domain	Domain	Interproscan
PF02896 all species →	PEP-utilizers_C	PEP-utilising enzyme, PEP-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR002192 all species →	Domain	Pyruvate phosphate dikinase, AMP/ATP-binding	Interproscan
IPR036637 all species →	Homologous_superfamily	Phosphohistidine domain superfamily	Interproscan
IPR018274 all species →	Active_site	PEP-utilising enzyme, active site	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR008279 all species →	Domain	PEP-utilising enzyme, mobile domain	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR006319 all species →	Family	Phosphoenolpyruvate synthase	Interproscan
IPR023151 all species →	Conserved_site	PEP-utilising enzyme, conserved site	Interproscan
IPR000121 all species →	Domain	PEP-utilising enzyme, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43030 all species →	PHOSPHOENOLPYRUVATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0008986 all species →	Molecular Function	pyruvate, water dikinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01007	pps, ppsA; pyruvate, water dikinase	EC:2.7.9.2	Methane metabolism	ko00680	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000022744.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.