Gene detail

Detailed information of BRAKERKREP00000022772.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_207408681.1, aminopeptidase P family protein [Bordetella petrii]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

BRAKERKRET00000022772

ATGTCTACCGTCCATGTCCGCCTCACCCGCTTGCGGCAAGCGATGAAACGCCGCGGCTTAGCCGCATATATTGTGCCGTCCGCCGACCCGCACCTATCTGAATATTTGCCAGCGCGGTGGGAAGGTAGGCGTTGGCTGTCTGGCTTTAACGGCTCTGCGGGGACGCTGGTGGTGACGCGACGCTTCGCTGGCTTATGGGTGGATAGCCGTTACTGGGAGCAGGCCGAGACCGAATTGGCCGGGACTGGCATACAGATGATGAAACTCACCTCGGGTGCCACGCCCGGTCACGTGGAGTGGCTGGCGGCGCATATGCGCCGAGGTGATCGAGTGGGGGTGGACGGCCACGTGCTGGGGCTAGCGGCCTTCCGTACCTTGTCGGCAGCCTTAGCGGGGGCGGGGGTGAAACTGGACATCATGGCCGATTTGATAGAGGAAATATGGCCGGATCGACCCGGTCTACCTACGGCGCAGGTTTATGGGCATGCAGCGCTCTATGCTTGTGTATCGCGCCGCGAGAAACTGGCGCGTGTGCGAGCTGAGATGCGCGCGCGCGGCGCTAAGGCGCATTGGCTCTCTACTTTGGATGATATTGCTTGGTTATTTAATTTGCGCGGTGCCGATGTCGAATATAACCCCGTCTTTTTAGCGTATGCGCTTATCGGCCCCGACTATGCCACGCTGTTTGTGGCAGAGGGCAAAATCGACACCGTTTTACAAGCTACTCTGGCCAGGGACGGCGTGGACGTGGCCCCTTATGGGCAAGCGGCCGAGGCATTGGGCTCGTTGCAACGCGATCAAACCTTGCTCATTGATCCGGCGCGCGTCACCTGCGGCGTGTTTCACGCGATGGACCCTGCGGTACCGCGAATAGAGGGTATCAATCCGTCGGTGCTGTTTAAATCATGTAAAACAGAGGCTGAGCTATCGCACATACGCGCGGCGATGGCGCAAGACGGCGCTGCCTTGTGCGAATTCTTGGCTTGGTTCGAAGACAGACTCGGTAAGGAAACCATTACCGAACTCACCATAGACGAAAAGCTAACGGCGGCGCGGGCCCGTCGGCCCGGCTATGTGTGTCCGAGTTTTGCCACCATTGCTGGCTTTAACGCCAATGGCGCCATGCCGCATTACCGCGCGACATCCGCCTCGCATGCGGTGATTGAAGGCGATGGCCTGCTACTGATTGACTCTGGTGGCCAGTATTTAGGGGGAACCACGGACATTACGCGTGTGGTGGCGGTGGGTACGCCTAGCGCCGACCAAAAGTGCGACTTTACGCTCGTGCTTAAGGGAATGATCGCTCTTTCGCGCGCCTGCTTTCCGCGCGGCGTCCCATCACCCATGCTGGACGCGATTGCGCGCGCGCCGCTTTGGCAAGGCGGAACGGAGTATGGTCATGGCACCGGTCATGGGGTGGGATATTTTCTCAATGTGCATGAAGGCCCCCAAGTCATTTCTTACCGCGCTACGCCAGGGCCGCACACGGCGATGGAACCCGGCATGATTACCTCCAACGAGCCCGGTATTTATCGCCCGGGATGTTGGGGCGTACGTATTGAGAACCTGGTGGTTAGCCGAAGCTGGCAAAGTAATGAGTGGGGCGAATTTCTTTGCTTTGAGACGCTGACCTTATGTCCGATAGACACACGGTGTGTCGAACTATCGCTGTTAGGTGCTGATGAACTCGCTTGGCTCAATGATTATCATCAAAACGTACGTGAACGTTTGTGGCCGTTGGTGCAGGGCCCGGCGCGTGCTTGCctgcaaaatttaatttgtccGCTTTCTGGTAGGCCGGTCTCTGCTAGAAATACCTCGTTTGTTCATGGCCTCACTAGAGTCGCAAATCAACCGTCAACAGAAAACGACAACAAGCGGATCAACTTACCCCGACTTCCCCCCGAGATATGGAATCAAATCATTCAGAAGACCGTTGCAAGTTGTACAACGGAGGACTGCCCGGATTTTTACAAGATAGCCAAGCAATTAAGTACGCTTGGGCTGGTGAATAAGCAATTTTTCGAGTTGGTTAAACGGCGTCCTGAATACATACATTTAAAGTCTCTGCAGTCCTTACTGCCTATTTTGACCAAAACAGCTGAGAAAATCGTCTCAGCGGATTTGCAGAGACGCCATCCGGTCACTTTACACGCGCTGGACAAAGTATCACCAAAGTCCGGTCCATCATTGCTTGGGCTAATGCGCCCAAAAAAGAGAGCCAAGTTCGTTAAGAGGATGACGCATGATAAGAACCAAGACAGAATTACGAAACTACAGGGGAGCTTACGCTTGGACTCGCACAAGCTTAAGCAGCTGATAGAAAGTAGGCAAGCTCTCAAGCTCGACGAATGCATCGAAGCAATAGCCCAGCAGGTAGATTTGCATCTACCTACTAATTCAGAATTGCTTgcttataaaatttgtaatgtgGTTGACGCAGTTCTTACCCAACCAATAAGCAGCCAGTTACAAAAACTCTTTATcgctgcaaaaaaaatctctaatgaaaattataaggCTATAGCATTGGCAGGTTTGTATCGGGCAATGCCGTTCTTGCCTGAGGAAGAACGTAATGAGCTTTTTAACCTCCTCATTAAAATCGTCAAAACAGCAACCCGTGAGATAAAGTCAGAGATCGACAACCTGCTCAACACCATGGCTAGACAGACTAAGCGCCTTAACTCTGCGCAGCTGACCACCTTCATTGATTCCGTCATGACGTATGAGGACAAAGTCCGGCGCACCCAATTACTGTGGTCCTTAACTATCGCCGCAGCGCACTTAGACCAACGCCTACATTCAGTGCTTACCGTCGCCCTAGCAAAATCGAAAGAAAATCCCACGTTCTATGGTCGCTTGCTTCGCGTGCTGCAAATAGCCCAGCTGTCCGAAGACTCACGCCACCAACTGGTTAGCGAACTGCTGCATATCGCTAACCAAAAAGAAAAGGCATATATGCTGGGTTTGTTAGGCAGCCGGATGCAATACCTGCACCCAGCAGATCGTGGGGACGTTCTTAACAACGTCTTGTCCCTCATTGACGAATCAGAAAAAATCGCGGCGCTGCGCGGCATAGCCCTTAGTATCTTTTATCTGGAAGAAAAGGATGCTCATCGTCTGCTTGGCGCCATCGCAGTCATTAGCGGGCTGTATCAACGCGAGCTGTATCAACGCGCCGACGTGCTTAGTATTTTAGTAGGCGCTGTGTACAAAAAATTGGCCGGCCTGCCATAG

Transcript

BRAKERKRET00000022772

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8RY11	Aminopeptidase P2 OS=Arabidopsis thaliana OX=3702 GN=APP2 PE=2 SV=1
Q54G06	Xaa-Pro aminopeptidase 1 OS=Dictyostelium discoideum OX=44689 GN=xpnpep1 PE=3 SV=1
Q0CDB3	Probable Xaa-Pro aminopeptidase P OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ampp PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000967 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16188 all species →	Peptidase_M24_C	C-terminal region of peptidase_M24	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF01321 all species →	Creatinase_N	Creatinase/Prolidase N-terminal domain	Domain	Interproscan
PF16189 all species →	Creatinase_N_2	Creatinase/Prolidase N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033740 all species →	Domain	Aminopeptidase P	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR032416 all species →	Domain	Peptidase M24, C-terminal domain	Interproscan
IPR050422 all species →	Family	Xaa-Pro aminopeptidase P	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan
IPR000587 all species →	Domain	Creatinase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43763 all species →	XAA-PRO AMINOPEPTIDASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000022772.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000022772.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

1TPM > 0

7Conditions

0.5Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	1	0.03	0.53
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.53
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	0.00
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	0.00
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	0.00
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	0.00
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	0.00
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	0.00
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.