Gene detail

Detailed information of BRAKERKREP00000022792.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: MBR7784214.1, nucleotide sugar dehydrogenase [Undibacterium luofuense]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9RHD7	UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa OX=287 GN=wbpO PE=1 SV=1
Q04972	UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Salmonella typhi OX=90370 GN=wcdA PE=1 SV=1
P39861	Protein CapL OS=Staphylococcus aureus OX=1280 GN=capL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016447 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03721 all species →	UDPG_MGDP_dh_N	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	Domain	Interproscan
PF03720 all species →	UDPG_MGDP_dh_C	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	Domain	Interproscan
PF00984 all species →	UDPG_MGDP_dh	UDP-glucose/GDP-mannose dehydrogenase family, central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001732 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	Interproscan
IPR014027 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR017476 all species →	Family	UDP-glucose/GDP-mannose dehydrogenase	Interproscan
IPR028359 all species →	Family	UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase	Interproscan
IPR036220 all species →	Homologous_superfamily	UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily	Interproscan
IPR014026 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43491 all species →	UDP-N-ACETYL-D-MANNOSAMINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0000271 all species →	Biological Process	polysaccharide biosynthetic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02474	wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase	EC:1.1.1.136 EC:1.1.1.-	O-Antigen nucleotide sugar biosynthesis	ko00541	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000022792.1 across 29 RNA-seq samples of Hydra viridissima. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

14TPM > 0

7Conditions

118.0Max TPM

16.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole body	18	4	14.73	118.04
Whole	6	6	11.24	17.23
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	1	27.15	27.15
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	1	27.61	27.61
symbioic hydra M9 strain · symbioic hydra rep1	1	1	43.29	43.29
symbioic hydra M9 strain · symbioic hydra rep2	1	1	53.58	53.58
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977	118.04
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977	102.63
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977	23.10
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977	21.40
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977	0.00
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397	17.23
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397	15.03
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397	11.03
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397	10.51
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397	10.09
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397	3.56
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902	27.15
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902	27.61
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902	43.29
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902	53.58
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636	0.00

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.