Gene detail

Detailed information of BRAKERKREP00000022802.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: SEJ43479.1, shikimate kinase [Achromobacter sp. NFACC18-2]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2L1Z2	Shikimate kinase OS=Bordetella avium (strain 197N) OX=360910 GN=aroK PE=3 SV=1
Q7WR85	Shikimate kinase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=aroK PE=3 SV=1
Q7W2B7	Shikimate kinase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=aroK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0027737 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01202 all species →	SKI	Shikimate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031322 all species →	Family	Shikimate kinase/gluconokinase	Interproscan
IPR023000 all species →	Conserved_site	Shikimate kinase, conserved site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000623 all species →	Family	Shikimate kinase/Threonine synthase-like 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21087 all species →	SHIKIMATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004765 all species →	Molecular Function	shikimate kinase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00891	aroK, aroL; shikimate kinase	EC:2.7.1.71	Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.