Genomic Location: not available for this species
NR annotation: WP_233233426.1, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA [Bordetella sp. LUAb4]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000022892 |
| Transcript |
| BRAKERKRET00000022892 |
| Protein |
| BRAKERKREP00000022892.1 |
| UniProt accession | Description |
|---|---|
| Q7WG20 | Ribosomal RNA small subunit methyltransferase A OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=rsmA PE=3 SV=1 |
| Q7W4J6 | Ribosomal RNA small subunit methyltransferase A OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=rsmA PE=3 SV=1 |
| Q7VU11 | Ribosomal RNA small subunit methyltransferase A OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=rsmA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005704 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00398 all species → | RrnaAD | Ribosomal RNA adenine dimethylase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011530 all species → | Family | Ribosomal RNA adenine dimethylase | Interproscan |
| IPR001737 all species → | Family | Ribosomal RNA adenine methyltransferase KsgA/Erm | Interproscan |
| IPR020596 all species → | Conserved_site | Ribosomal RNA adenine methylase transferase, conserved site | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR020598 all species → | Domain | Ribosomal RNA adenine methylase transferase, N-terminal | Interproscan |
| IPR023165 all species → | Homologous_superfamily | rRNA adenine dimethylase-like, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11727 all species → | DIMETHYLADENOSINE TRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000179 all species → | Molecular Function | rRNA (adenine-N6,N6-)-dimethyltransferase activity | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0000154 all species → | Biological Process | rRNA modification | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0031167 all species → | Biological Process | rRNA methylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02528 | ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase | EC:2.1.1.182 | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of BRAKERKREP00000022892.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
