Genomic Location: QPEY01000524.1:583800...586777
NR annotation: WP_125472614.1, ShlB/FhaC/HecB family hemolysin secretion/activation protein [Achromobacter aegrifaciens]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000022895 |
| Transcript |
| BRAKERKRET00000022895 |
| Protein |
| BRAKERKREP00000022895.1 |
| UniProt accession | Description |
|---|---|
| Q7CGD8 | Outer membrane transporter CdiB OS=Yersinia pestis OX=632 GN=cdib PE=3 SV=1 |
| P35077 | Filamentous hemagglutinin transporter protein FhaC OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=fhaC PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0024840 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03865 all species → | ShlB | Haemolysin secretion/activation protein ShlB/FhaC/HecB | Family | Interproscan |
| PF13302 all species → | Acetyltransf_3 | Acetyltransferase (GNAT) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005565 all species → | Domain | Haemolysin activator HlyB, C-terminal | Interproscan |
| IPR000182 all species → | Domain | GNAT domain | Interproscan |
| IPR051544 all species → | Family | Two-partner secretion system outer membrane transporter | Interproscan |
| IPR016181 all species → | Homologous_superfamily | Acyl-CoA N-acyltransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR34597 all species → | SLR1661 PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016747 all species → | Molecular Function | acyltransferase activity, transferring groups other than amino-acyl groups | Interproscan |
| GO:0008320 all species → | Molecular Function | protein transmembrane transporter activity | Interproscan |
| GO:0046819 all species → | Biological Process | protein secretion by the type V secretion system | Interproscan |
| GO:0098046 all species → | Cellular Component | type V protein secretion system complex | Interproscan |
BRAKERKREP00000022895.1.Transcript abundance of BRAKERKREP00000022895.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
