Gene detail

Detailed information of BRAKERKREP00000022922.1 in Hydra viridissima

Genomic Location: QPEY01000524.1:1160906...1163895
NR annotation: WP_103272888.1, DNA translocase FtsK [Achromobacter sp. AONIH1]
Species Hydra viridissima · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERKRET00000022922

ATGCCGCGTATTTCAACCGTCTCCCCGCGCACCTCGCGCAATACCCGTAACGGCCCTTCACCGCTGCAGACGCGTATTTCTGCCTTGGCGCGTGAAGCGCGTTGGATGTTTTTCGCCGCGCTCGCGGCCTGGCTCGCTCTGGTGTTGGCCACCTGGAGCGCGGCAGATCCCGGCTGGTCACACTCAGTGCCCGCGGGGCCCATTCATAACCGTGGCGGCGCTTTAGGTGCTTATCTGTCCGATATCCTGCTTTACCTGTTCGGTTATTCCGCTTGGTGGTGGGTCGTCGTGCTGTTGCACCGGGTCCGTGCGGGCTATCGGCGTTTGGCCAACCAATTACGTGGCGCCGACCCCAAAGCGGCGGAAATGCTACCCCGTGTCCACTGGGAGCAGGGCGTGGGCTTTATTTTGCTGCTGGTAGGTTCCTTTGGGCTCGAAGCTTTGCGCCTATATTCCTGGGGTGCGCATTTACCAGGTAGTACCGGCGACAATAGCGGCGCCGGTGGCGTTATTGGTCATATGCTGGCTACCTGGCTCGCCCGCAACATAGGTTTTACCGGCGGTACCTTAGTAGTATTGGTCATGATCGCCGTGGGCTTAAgcttgtttttctctttttcatgGCTCACGTTGGCCGAACGCGTAGGGGGGTGGATCGAACGAGGGCTGCAGCACCTGCGCGCGGCCTATGCGGCTCGCCAAGACCGTAAGATGGGCGAAATGGCCACGGCAGCACGTACTGAACAGGTCGTCGCCAAGCAAGAAAAGTTGCTTCATGAACAGCCGGTGCGGATTGAACCGGCTATTACCGTGGTGCCCAAATCCGAACGCGTCGAAAAGGAAAAACAGCAAACGCTTTTTACGCCGCCTGCAGTTGAGGGCGATTTACCCGCTATTGGTTTGCTTGATCCAGCGCCGCCCAATCAGGAAACCGTTTCTGCCGAAACCATCGAATTCACTTCTCGTTTAATTGAGAAAAAGTTAGCCGATTTTGGCGTCACAGTGACGGTAGTGGCGGCGCAGGCTGGCCCGGTTATTACGCGTTATGAAATTGAGCCGGCTACGGGTGTCAAGGGTAACCAAATTGTCAATCTCGCTAAAGATTTAGCGCGCGCGCTCAGCCTGGTGAGTATACGGGTGGTGGAAACCATTCCGGGTAAAAATCTCATGGGCTTAGAGCTACCTAACCCGCGCCGCCAAATGGTCAAGCTATCGGAGATTTTGGGTTCACAGACCTATCATGCCAGCCATTCCGTGGTGACCATGGCGTTGGGCAAAGATATTGCTGGCCATCCCGTGGTGGCTGATCTCGCTAAGATGCCACATTTACTGGTAGCGGGTACCACGGGCTCGGGCAAGTCGGTGGGAATTAATGCCATGATTTTGTCGCTGTTATACAAAGCCGACGCTACGCATACCCGCCTCATCCTCATCGATCCGAAGATGCTTGAAATGAGCGTCTACGAAGGCATTCCTCATTTGCTGGCGCCGGTGGTCACCGATATGCGCCAGGCCGCTTGCGCGCTGAACTGGTGTGTGAGCGAAATGGAAAAGCGCTATCGTCTGATGAGTAAGATGGGGGTGCGCAATTTAGCCGGTTATAACGCCAAAATTCGCGAAGCCCTCAAACGCGACGAGCCTATTCCCAATCCCTTTTCACTCACCCCTGACCAGCCAGAGCCGCTGGCGGCGCTGCCCACCATTGTGGTGGTCATTGATGAGCTGGCCGATCTGATGATGGTGGTGGGCAAGAAAATCGAAGAGCTCATCGCTCGTTTGGCGCAGAAGGCCCGGGCCGCGGGTATACACCTCATTCTGGCCACCCAGCGGCCCAGTGTGGATGTAATCACCGGCCTCATTAAAGCCAATATTCCTACCCGCATCGCATTTCAAGTTTCATCCAAAATTGATTCTCGTACTATTTTGGATCAAATGGGCGCAGAGACGTTGCTGGGTCAAGGCGATATGCTTTACCTGCCGCCCGGAAGTGGTCTGCCCGTACGCGTGCATGGCGCGTTTGTGAGCGATGATGAAGTTCATCGCGTCGTGGAACAGCTTAAGTCGCAGGGTGAACCAAACTATATTGAAGGGCTGCTTGAAGGCGGTCTGGAAGGCGATGGCAGTGAGGGCGCCGGCAGTATTACGGGGATAGGCGGCGACGCCGAATCCGATCCCATGTACGATCAAGCGTGCGAAGTGGTGCTTAAACATCGTCGTGCTTCCATCTCGCTCGTTCAGCGCCACTTGCGCATTGGCTATAACCGGGCGGCGCGGTTACTTGAGCAAATGGAACAAGCGGGGATGGTGTCCGCTATGCAGTCCAATGGCAACCGAGAGATTCTGCGGCCGGGCAAATTTAAGTGGACTGTGGAGCAGCCGTATGAACAGCGCATTGTGGCCGACGGCAAGAATGTTTTTCAGTATGACCCTGATCTGGCCCAGGTCACGGTGCGCAAGCTGGAGCTAGCAATTGGCACTTCGCCTGCTGCCATCTTGTTTGGTTCGGCTGTGCTCGAGCAGACTTTTGAACTTACCGTGCTGAGCGAGCGCGACGGCTTGCAGTGGCTGCGCGCCAAGCCGCGCCAAGCCGATGCCGGTTTTTCGCAAGTGGATATCGGCCTCCATGACAATTTGCCGGTGCGCATTGAGCTCCTCGATGCATTCGGCCAAATGACGCAGGTTTATTTGTCGGGCATGCGGTCTAATCCGGTGTTGGCTGCGACCGAATTCGAGTTTACGCCGCCTAAGGGCGTAGACATGGTACAGATGTAG

Transcript

BRAKERKRET00000022922

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8XWX9	DNA translocase FtsK 2 OS=Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000) OX=267608 GN=ftsK2 PE=3 SV=1
Q8P993	DNA translocase FtsK OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=ftsK PE=3 SV=1
Q8PL00	DNA translocase FtsK OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=ftsK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013375 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03548 all species →	LolA	Outer membrane lipoprotein carrier protein LolA	Family	Interproscan
PF09397 all species →	FtsK_gamma	Ftsk gamma domain	Domain	Interproscan
PF17854 all species →	FtsK_alpha	FtsK alpha domain	Domain	Interproscan
PF13491 all species →	FtsK_4TM	4TM region of DNA translocase FtsK/SpoIIIE	Domain	Interproscan
PF01580 all species →	FtsK_SpoIIIE	FtsK/SpoIIIE family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018323 all species →	Family	Outer membrane lipoprotein carrier protein LolA, Proteobacteria	Interproscan
IPR004564 all species →	Family	Outer membrane lipoprotein carrier protein LolA-like	Interproscan
IPR018541 all species →	Domain	FtsK gamma domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002543 all species →	Domain	FtsK domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR041027 all species →	Domain	FtsK alpha domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR025199 all species →	Domain	DNA translocase FtsK, 4TM region	Interproscan
IPR050206 all species →	Family	FtsK/SpoIIIE/SftA cell division and DNA translocation	Interproscan
IPR029046 all species →	Homologous_superfamily	Lipoprotein localisation LolA/LolB/LppX	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22683 all species →	SPORULATION PROTEIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042597 all species →	Cellular Component	periplasmic space	Interproscan
GO:0042953 all species →	Biological Process	lipoprotein transport	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of BRAKERKREP00000022922.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

29Samples

0TPM > 0

7Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
whole body	18	0	0.00	0.00
Whole	6	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep1	1	0	0.00	0.00
aposymbioic hydra M9 strain · aposymbioic hydra rep2	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep1	1	0	0.00	0.00
symbioic hydra M9 strain · symbioic hydra rep2	1	0	0.00	0.00
unannotated	1	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR21134050	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134051	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134052	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134053	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134054	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134055	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134056	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134057	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134058	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134059	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134060	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134061	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134062	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134063	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134064	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134065	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134066	whole body	whole body	not recorded	not recorded	SRP392977
SRR21134067	whole body	whole body	not recorded	not recorded	SRP392977
SRR10058802	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058803	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058804	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058805	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058806	Whole	Whole	not recorded	not recorded	SRP220397
SRR10058807	Whole	Whole	not recorded	not recorded	SRP220397
DRR048593	aposymbioic hydra M9 strain · aposymbioic hydra rep1	not recorded	not recorded	aposymbioic hydra rep1	DRP003902
DRR048594	aposymbioic hydra M9 strain · aposymbioic hydra rep2	not recorded	not recorded	aposymbioic hydra rep2	DRP003902
DRR048595	symbioic hydra M9 strain · symbioic hydra rep1	not recorded	not recorded	symbioic hydra rep1	DRP003902
DRR048596	symbioic hydra M9 strain · symbioic hydra rep2	not recorded	not recorded	symbioic hydra rep2	DRP003902
ERR13389755	unannotated	not recorded	not recorded	not recorded	ERP162636

Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM, StringTie quantification over 29 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.