Genomic Location: QPEY01000524.1:2110401...2111558
NR annotation: WP_152383771.1, MULTISPECIES: 3-phosphoshikimate 1-carboxyvinyltransferase [Achromobacter]
Species Hydra viridissima · all data for this species · gene families
| CDS |
| BRAKERKRET00000022940 |
| Transcript |
| BRAKERKRET00000022940 |
| Protein |
| BRAKERKREP00000022940.1 |
| UniProt accession | Description |
|---|---|
| A9IJI7 | 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=aroA PE=3 SV=1 |
| Q2L2S7 | 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bordetella avium (strain 197N) OX=360910 GN=aroA PE=3 SV=1 |
| Q7W602 | 3-phosphoshikimate 1-carboxyvinyltransferase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=aroA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0020649 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00275 all species → | EPSP_synthase | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006264 all species → | Family | 3-phosphoshikimate 1-carboxyvinyltransferase | Interproscan |
| IPR036968 all species → | Homologous_superfamily | Enolpyruvate transferase domain superfamily | Interproscan |
| IPR023193 all species → | Conserved_site | 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site | Interproscan |
| IPR013792 all species → | Homologous_superfamily | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Interproscan |
| IPR001986 all species → | Domain | Enolpyruvate transferase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21090 all species → | AROM/DEHYDROQUINATE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003866 all species → | Molecular Function | 3-phosphoshikimate 1-carboxyvinyltransferase activity | Interproscan |
| GO:0009073 all species → | Biological Process | aromatic amino acid family biosynthetic process | Interproscan |
| GO:0016765 all species → | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0009423 all species → | Biological Process | chorismate biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00800 | aroA; 3-phosphoshikimate 1-carboxyvinyltransferase | EC:2.5.1.19 | Phenylalanine, tyrosine and tryptophan biosynthesis | ko00400 | deepkoala |
Transcript abundance of BRAKERKREP00000022940.1 across 29 RNA-seq samples of Hydra viridissima. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole body | 18 | 0 | 0.00 | 0.00 | |
| Whole | 6 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| aposymbioic hydra M9 strain · aposymbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep1 | 1 | 0 | 0.00 | 0.00 | |
| symbioic hydra M9 strain · symbioic hydra rep2 | 1 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (HVIRI_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
