Gene detail

Detailed information of BRAKERKREP00000022983.1 in Hydra viridissima

Genomic Location: :...
NR annotation: MBO9353620.1, translation initiation factor IF-2 [Bordetella petrii]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERKRET00000022983

ATGCCTGCCAATATGCTGCTTGAACAGTTGCGCTCGGCGGGTATTGACCTCAAATCGGTAGACGATGCCGTCACCGACAGCGACAAGGCGAAATTGCTCGATTCGCTGCGTCGCGCCCATGGTACGACCGAAGGCAAGAAAATTACCCTCACGCGCCGCCAGACGTCGGAGATTCGGCAGGCCGACGCCACCGGGCGCTCACGTACGATCCAGGTGGAAGTGCGTAAGAAGCGGGTCTTTGTTAAACGCGATCCATCCGAACTGGCGTTGGAAGCCGCCGCTGGGCGACCCGAAGAAGAGGTGGTGGCGCCTGAAGCCCTTGCCGAAACTGTGTCGTCGTCCGTGGTTGAACCGGCTGAGCCCGTTGCTCTCATTGAACCGCAGGCGCCGGCTATCGAGCTAAACGCGTCCGCTGTAGTTGAACCACCCGCGGCTGAACCTGAATCGGTTGCGGCGGCAACGCCCAAGGCTGTTGGAGAGCCGCCCCCTGAGTTGCCAGCGGCGCATGCTGTTACACCCGCGACTGCCGTCGAGCCGGCGTCTATGCCAATACAGCCTGCCCCACTTGTTCAAGAAAACCGGGACCAAGCCCGCCGCCACGCTGAGGCCGAGGCGGCTGCCTTACGTGAGATGTTGCTTCGTCCGCGCAAGGTGTTGCGGGCGCCGGAGCCTGACGCGAATGCGGCTGCGCTGTCCGGCACGCTGCATAAGCCAGCGGGCAAAGTTGGGTCGGGCGGTGGCAAAAAAGATGCAAAATCGGCAGCGGGCGCCAAAAAGACCATTAAGACGGCTGAGGTGGCGTCCACCTGGTCGGACGACGCTGCTCGTAAAAAGCCGGCTGAAAAGCCGGCTGTGTCCAGCCGCGACGGTTGGCGCGCGGGCGGCAAGGGGGGCAAGACTAGCGCCCGCGGTAATCGTGCACAGCAAGCCGAACGTCATAGCGAACCCGCGCCGCAGGAATTTATTGCTCGCGAAGTGCATGTACCTGAAACCATTACGGTGGCGGACCTCGCGCACAAAATGTCGGTGAAGGCGGCCGAAGTTATTAAGCAACTGATGAAGCTAGGCCAGATGGTCACTATCAATCAGGTGCTGGACCAGGAAACCGCCATGATCGTGGTGGAAGAACTCGGTCACACAGCCATTGCCGCTAAGCTGGATGATCCAGAAGCGTTCCTCGATATAGCGGTGGGTAATGAGGCTGAGTCTTTACCGCGTGCGCCAGTCGTTACCGTCATGGGTCACGTCGACCACGGGAAAACTTCGTTGCTCGACTATATCCGCCGCGCCAAGGTGGCTGCAGGTGAGGCCGGTGGTATCACGCAACATATAGGTGCCTACCATGTACGAACAGAACGTGGCATGGTGACCTTTCTTGATACGCCCGGTCATGAGGCGTTTACCGCTATGCGCGCCCGTGGTGCTAAGGCGACCGACATCGTGATTTTGGTGGTGGCGGCGGACGATGGCGTTATGCCGCAGACGCGCGAGGCTATCCACCATGCGAAGGCAGCGGGTGTGCCGCTGGTGGTGGCCGTCAACAAAATAGATAAGCCCGATGCCAATCCCGAGCGGGTCAAGCAAGAGCTCGTTGCCGAACAGGTGGTTCCCGAGGAATACGGCGGCGACGTGCCGTTTGTGGCCGTGTCGGCCAAAACGGGCGACGGTATCGACGATTTGCTTGAGAACGTGTTGCTGCAAGCCGAAATTCTCGAACTCAAGGCACCCGAAAACGCCCTCGCCAAGGGGTTAGTGATCGAAGCCCGCCTAGACAAGGGCCGGGGTCCGGTGGCAACGATTTTGGTGCAAAGCGGTACGCTTAAGCGCGGTGACGTTGTTTTGGCTGGCGCCAGCTTCGGCCGGGTGCGCGCAATGTTGGACGAAAACGGCAAACAGGTGCAAAGCGCCGGCCCGTCTATTCCAGTAGAAATCCAGGGGCTTACCGATGTGCCGGCCGCAGGCGATGAGCTTATGGTGCTCAACGACGAGCGCAAGGCGCGTGAAATCGCTTTATTTCGCCAGGGCAAGTTCCGCGATGTCAAGCTGGCGCGGCAGCAGGCCGCCAAGCTCGAATCTATGTTTGACAATATGGGCGAAGGTACGCAGACCTTACCGCTTATCGTCAAGACCGACGTGCAAGGTTCGCAGGAAGCGCTGGTTACGGCGCTTACCAAGCTCTCCACTGACGAGGTGCGGGTGCAGGTAGTGCACGCGGCCGTAGGGGGCGTTTCTGAAAGCGACGTCAACCTGGCTATTGCCTCAAACGCCGTGGTGATCGGGTTTAACGTGCGCGCCGAGCAAAGCGCCAAAAAGCTAGCCGAAGCCAACGGCATCGACCTCCGCTACTACAACATCATTTACGATGCCGTCGATGAAGTTAAAGCAGCTATGTCGGGCATGCTCGCCCCTGAGAAGAAGGAAGAGGCCATAGGTTTAGTAGAAATTCGTGAGGTCTACTCCATCTCCCGTGTTGGCAATATTGCTGGCTGCATGGTGCTCGATGGCCTTATCCGCCGCGATTCGCAAGTCCGACTGCTGCGTAACAATGTGGTGCATTGGAGTGGCCATGTCGAATCACTGCGTCGCTTTAAAGACGACGTGAAAGAGGTCAAGTCTGGCTTCGATTGTGGCCTTACACTGCGTGGCAATAATGACATCCAAGTGGGCGATCAGTTGGAAGTGTTTGAGATTAAGGAAATCGCTCGTACGCTGTAG

Transcript

BRAKERKRET00000022983

Protein

Uniprot

Uniprot term	Description
Q7VYR2	Translation initiation factor IF-2 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313 GN=infB PE=3 SV=1
Q7W9A5	Translation initiation factor IF-2 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311 GN=infB PE=3 SV=1
Q7WHG2	Translation initiation factor IF-2 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=infB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF08364	IF2_assoc	Bacterial translation initiation factor IF-2 associated region	Family	Interproscan
PF04760	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan
PF11987	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000178	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR036925	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044145	Domain	Translation initiation factor IF-2, domain II	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR013575	Domain	Initiation factor 2 associated domain, bacterial	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR015760	Family	Translation initiation factor IF- 2	Interproscan
IPR006847	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR023115	Domain	Translation initiation factor IF- 2, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala