Gene detail

Detailed information of BRAKERKREP00000023105.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: WP_086057718.1, PAS domain-containing sensor histidine kinase [Bordetella genomosp. 9]
Species Hydra viridissima · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P37739	C4-dicarboxylate transport sensor protein DctS OS=Rhodobacter capsulatus OX=1061 GN=dctS PE=3 SV=1
P26489	Sensor protein FixL OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=fixL PE=3 SV=1
P23222	Sensor protein FixL OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=fixL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0033529 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF13188 all species →	PAS_8	PAS domain	Domain	Interproscan
PF08448 all species →	PAS_4	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR000700 all species →	Domain	PAS-associated, C-terminal	Interproscan
IPR013656 all species →	Domain	PAS fold-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43065 all species →	SENSOR HISTIDINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023105.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.