Gene detail

Detailed information of BRAKERKREP00000023218.1 in Hydra viridissima

Genomic Location: not available for this species
NR annotation: KAF1858374.1, hypothetical protein Lal_00014881 [Lupinus albus]
Species abbreviation HVIRI · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9IHS0	Small ribosomal subunit protein uS13 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100 GN=rpsM PE=3 SV=1
Q2L248	Small ribosomal subunit protein uS13 OS=Bordetella avium (strain 197N) OX=360910 GN=rpsM PE=3 SV=1
Q7WRA0	Small ribosomal subunit protein uS13 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310 GN=rpsM PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005576 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411 all species →	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan
PF00416 all species →	Ribosomal_S13	Ribosomal protein S13/S18	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR018102 all species →	Conserved_site	Small ribosomal subunit protein uS11, conserved site	Interproscan
IPR001971 all species →	Family	Small ribosomal subunit protein uS11	Interproscan
IPR027437 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13, C-terminal	Interproscan
IPR001892 all species →	Family	Small ribosomal subunit protein uS13	Interproscan
IPR010979 all species →	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11759 all species →	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERKREP00000023218.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.